BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0271.p         (239 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO3918 [M] COG0810 Periplasmic protein TonB, links inner and ou...    42   0.002
Cj1630 [M] COG0810 Periplasmic protein TonB, links inner and out...    39   0.009
XF1957 [M] COG0810 Periplasmic protein TonB, links inner and out...    39   0.014
AGpA528 [MU] COG3468 Type V secretory pathway, adhesin AidA Atu ...    37   0.056

>YPO3918 [M] COG0810 Periplasmic protein TonB, links inner and outer
           membranes Ype Yersinia pestis
          Length = 267

 Score = 41.6 bits (96), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 5/79 (6%)

Query: 137 SNTAHVEQ---TYVGQLRAHLNSIKRYPTGREASTLRPQGKVRVWFVLKRDGSVVDSGID 193
           S+++H +Q   ++  +L+ HL   KRYP+   A   + QG   + FV+ ++G V    + 
Sbjct: 162 SDSSHRQQAQVSWKSRLQGHLMGFKRYPSS--ARKQQQQGTAMIRFVVDKNGYVSSVQLS 219

Query: 194 SSSNSMLLDDAARKTINRA 212
            SS +  LD  A   I RA
Sbjct: 220 HSSGTSALDREALAIIKRA 238


>Cj1630 [M] COG0810 Periplasmic protein TonB, links inner and outer
           membranes Cje Campylobacter jejuni
          Length = 227

 Score = 38.9 bits (89), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 5/66 (7%)

Query: 160 YPTGREASTLRPQGKVRVWFVLKRDGSVVDSGIDSSSNSMLLDDAARKTINRANFAPFPE 219
           YP  R+A  +R QG V+V F+ K + ++ D  I   S   LLD +A ++I +A+   FP 
Sbjct: 151 YP--RQAKKMRMQGTVKVEFLWKENKTLADLKIIEISGYDLLDKSALESIRKASLN-FPH 207

Query: 220 DAYKGE 225
             Y G+
Sbjct: 208 --YNGD 211


>XF1957 [M] COG0810 Periplasmic protein TonB, links inner and outer
           membranes Xfa Xylella fastidiosa 9a5c
          Length = 299

 Score = 38.5 bits (88), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 48/102 (47%), Gaps = 9/102 (8%)

Query: 143 EQTYVGQLRAHLNSIKR-----YPTGREASTLRPQGKVRVWFVLKRDGSVVDSGIDSSSN 197
           E  Y   LRA ++  +R     YP   EA   R  G+V +   ++RDGSV  S +  SS 
Sbjct: 193 EYAYANYLRAWVDRAERVGNLNYPD--EARRRRLSGRVIITVGIRRDGSVDSSRVLISSG 250

Query: 198 SMLLDDAARKTINRAN-FAPFPEDAYKGEATHRFTADLEFIP 238
           S LLD AA + +  A  F P P+     +  H  T    F+P
Sbjct: 251 SPLLDAAALRIVQLAQPFPPLPKTQDNVDVLH-VTRTWLFLP 291


>AGpA528 [MU] COG3468 Type V secretory pathway, adhesin AidA Atu
           Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 921

 Score = 36.6 bits (83), Expect = 0.056,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 20/65 (30%)

Query: 90  VKQAPAPVEP-TTPSTEAPILPAAKPQASAPATP-PVQAA------------------PT 129
           V  AP P++P TTP  EAP +  A P +  P TP P + +                  P 
Sbjct: 498 VAGAPDPLQPNTTPEAEAPDITGAPPASQLPPTPLPTEGSSTTEPTDPTPPINAGDPQPV 557

Query: 130 TPPAP 134
            PP P
Sbjct: 558 APPTP 562



 Score = 34.3 bits (77), Expect = 0.28,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 30/102 (29%), Gaps = 12/102 (11%)

Query: 45  PVQIALMELPPPPPPQPKPQIEPPPKPVEPPKKQEAPKPVAKPAPVKQA----------- 93
           P   A+   P P  P   P+ E P     PP  Q  P P+                    
Sbjct: 493 PGSGAVAGAPDPLQPNTTPEAEAPDITGAPPASQLPPTPLPTEGSSTTEPTDPTPPINAG 552

Query: 94  -PAPVEPTTPSTEAPILPAAKPQASAPATPPVQAAPTTPPAP 134
            P PV P TP       P   P         + +A   PP P
Sbjct: 553 DPQPVAPPTPQAAGTASPPPAPPVPPTTLAMIPSASAIPPTP 594