BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0255.p (283 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa2309 [G] COG0395 ABC-type sugar transport system, permease co... 322 4e-88 PA3188 [G] COG0395 ABC-type sugar transport system, permease com... 160 3e-39 SMc04257 [G] COG0395 ABC-type sugar transport system, permease c... 157 3e-38 SPy0255 [G] COG0395 ABC-type sugar transport system, permease co... 154 2e-37 mll3315 [G] COG0395 ABC-type sugar transport system, permease co... 153 4e-37 >SMa2309 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 273 Score = 322 bits (826), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 147/268 (54%), Positives = 203/268 (75%) Query: 16 LYRASLPVALLIWLLPMLTALVTSMRSNDELMAGNYWGWPQDFAMLENYREALTGSPMLH 75 LY + L+IWL P+ ++TS RS ++M+GN WGWP + A++ENY T +PM Sbjct: 6 LYMTVVGAILIIWLAPLFAVILTSFRSMADVMSGNLWGWPTEIAVVENYTAVFTQTPMAG 65 Query: 76 YFWNSCLITIPSVVGAIALAAMAGFALSTYQFRGNTILFATFVACNFVPQQILMIPVRDL 135 YF NS +ITIPSV+G ++L+ +AGF L+ Y+F GN ++FA FV NF+P QI+MIPVRDL Sbjct: 66 YFLNSLVITIPSVIGVLSLSTLAGFVLARYRFPGNMVIFALFVGGNFLPHQIMMIPVRDL 125 Query: 136 TLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFYRIVL 195 + L L++T T +++FH+A QTGF TLF+RNFI LP E+ +AAR EGA+ + +V+ Sbjct: 126 MVRLNLYDTTTALIIFHVAFQTGFATLFMRNFIAALPDELFQAARAEGATPFQTLIHVVV 185 Query: 196 PLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALRGQWTTAWNLVSAGSI 255 PL+RPA AALA+L+FTF+WNDYFWA+VLT D+V P+T G+A LRG+W +AWNL+SAG+I Sbjct: 186 PLVRPAWAALAILLFTFIWNDYFWAVVLTVSDNVKPVTAGLANLRGEWVSAWNLISAGTI 245 Query: 256 LAALPSVILFFVMQKQFVAGLTFGASKG 283 + A+P V++FF+MQK F+AGLT GA KG Sbjct: 246 IVAVPPVVMFFLMQKHFIAGLTMGAVKG 273 >PA3188 [G] COG0395 ABC-type sugar transport system, permease component Pae Pseudomonas aeruginosa Length = 281 Score = 160 bits (404), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 92/274 (33%), Positives = 160/274 (58%), Gaps = 6/274 (2%) Query: 12 LNRVLYRASLPVALLIWLLPMLTALVTSMRSNDELMAGNYWGWPQDFAMLENYREALTGS 71 ++R+ +L A ++L+P+L L+TS ++ D++ GN P F ++ + Sbjct: 12 VSRLAVHLTLWGACALYLVPLLVMLLTSFKTPDDIRTGNLLSLPDTFTVIGWLKAW---D 68 Query: 72 PMLHYFWNSCLITIPSVVGAIALAAMAGFALSTYQFRGNTILFATFVACNFVPQQILMIP 131 + +FWNS LIT+P V+ + + A+ G+ LS ++FRG+ + F + F+P Q++++P Sbjct: 69 SVGAFFWNSVLITVPGVLISTFIGALNGYVLSMWRFRGSQLFFGALLFGCFLPFQVILLP 128 Query: 132 VRDLTLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMIEAARIEGASEWTVFY 191 + LGL NT +G++L H+ F TLF RN+ +P +++AAR++GA +T+F Sbjct: 129 MSFTLGKLGLANTTSGLVLVHVIYGLAFTTLFFRNYFVAIPDALVKAARLDGAGFFTIFL 188 Query: 192 RIVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGVAALRGQWT--TAWNL 249 RI+LP+ P + + FT +WND+ + +V GD PITV + L T +N+ Sbjct: 189 RILLPMSTPIVMVCLIWQFTQIWNDFLFGVVFASGDS-QPITVALNNLVNITTGVKEYNV 247 Query: 250 VSAGSILAALPSVILFFVMQKQFVAGLTFGASKG 283 A +++AALP+++++ + K FV GLT GA KG Sbjct: 248 DMAAAMIAALPTLVVYVLAGKYFVRGLTAGAVKG 281 >SMc04257 [G] COG0395 ABC-type sugar transport system, permease component Sme Sinorhizobium meliloti Length = 313 Score = 157 bits (396), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/295 (31%), Positives = 162/295 (54%), Gaps = 15/295 (5%) Query: 3 PMPIEKWKPLNRVLYR------ASLPVALLIWLLPMLTALVTSMRSNDELMAGNYWGWPQ 56 PM + + R L R +L V L +LLP+ +VTS++ E+ GN + P Sbjct: 20 PMAGPRGRKPRRTLSRRNIIVYGTLIVVALYYLLPLYVMIVTSLKGMPEIRVGNIFAPPL 79 Query: 57 DFAM---LENYREALTG---SPMLHYFWNSCLITIPSVVGAIALAAMAGFALSTYQFRGN 110 + ++ + EA TG + FWNS IT+PSV+ +IA+A++ G+AL+ ++F+G Sbjct: 80 EITFEPWVKAWAEACTGLNCDGLSRGFWNSVRITVPSVIISIAIASVNGYALANWRFKGA 139 Query: 111 TILFATFVACNFVPQQILMIPVRDLTLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQ 170 + F + F+P Q+++ P+ + +G++ T+TG+++ H TL RN+ Sbjct: 140 DLFFTILIVGAFIPYQVMIYPIVIVLREMGVYGTLTGLIIVHTIFGMPILTLLFRNYFAG 199 Query: 171 LPFEMIEAARIEGASEWTVFYRIVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVA 230 LP E+ +AAR++GA WT++++I+LP+ P +L T +WND+ + +V T+ + Sbjct: 200 LPEELFKAARVDGAGFWTIYFKIMLPMSLPIFVVAMILQVTGIWNDFLFGVVFTR-PEYY 258 Query: 231 PITVGVAALRG--QWTTAWNLVSAGSILAALPSVILFFVMQKQFVAGLTFGASKG 283 P+TV + + Q +N+ A +IL L + ++FV + FV G+ GA KG Sbjct: 259 PMTVQLNNIVNSVQGVKEYNVNMAATILTGLVPLTVYFVSGRLFVRGIAAGAVKG 313 >SPy0255 [G] COG0395 ABC-type sugar transport system, permease component Spy Streptococcus pyogenes M1 GAS Length = 276 Score = 154 bits (389), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 76/240 (31%), Positives = 141/240 (58%), Gaps = 4/240 (1%) Query: 44 DELMAGNYWGWPQDFAMLENYREALTGSPMLHYFWNSCLITIPSVVGAIALAAMAGFALS 103 D +M W WP+ +EN++ + +P L + WNS I++ ++ +++AG+AL+ Sbjct: 41 DTIMIPPQW-WPKA-PTIENFKALVVQNPALKWLWNSVFISVATMFLVCGTSSLAGYALA 98 Query: 104 TYQFRGNTILFATFVACNFVPQQILMIPVRDLTLSLGLFNTITGMMLFHIAMQTGFCTLF 163 +F G +LF+ F+A +P+Q++++P+ + +G+ +T+ ++L + F Sbjct: 99 KKRFYGQRLLFSIFIAAMALPKQVVLVPLVRIVNFMGIHDTLAAVILPLVGWP--FGVFL 156 Query: 164 LRNFIKQLPFEMIEAARIEGASEWTVFYRIVLPLIRPALAALAVLVFTFVWNDYFWALVL 223 ++ F + +P E++E+A+I+G E F+ + P+++P AALA+ F WNDYF LV+ Sbjct: 157 MKQFSENIPTELLESAKIDGCGEIRTFFNVAFPIVKPGFAALAIFTFINTWNDYFMQLVM 216 Query: 224 TQGDDVAPITVGVAALRGQWTTAWNLVSAGSILAALPSVILFFVMQKQFVAGLTFGASKG 283 + I++GVA ++ + T + L+ AG+ +AA+P V +F V QK F G+T GA KG Sbjct: 217 LTSRENLTISLGVATMQAEMATNYGLIMAGAAMAAVPIVTVFLVFQKSFTQGITMGAVKG 276 >mll3315 [G] COG0395 ABC-type sugar transport system, permease component Mlo Mesorhizobium loti Length = 311 Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 158/289 (54%), Gaps = 10/289 (3%) Query: 3 PMPIEKWKPLNRVLYRASLPVALLIWLLPMLTALVTSMRSNDELMAGNYWGWPQDFAM-- 60 P P + N LY +L +A L +LLP+ +VTS++ E+ GN + P + Sbjct: 25 PKPRHIFSRRNIFLY-GTLIMAALYYLLPLYVMIVTSLKGMPEIRLGNIFSPPLEITFEP 83 Query: 61 -LENYREALTG---SPMLHYFWNSCLITIPSVVGAIALAAMAGFALSTYQFRGNTILFAT 116 ++ + A TG + FWNS IT+PSV+ +IA+A++ G+AL+ ++F+G F Sbjct: 84 WVKAWSTACTGLNCDGLSRGFWNSVRITVPSVILSIAIASVNGYALANWRFKGADTFFII 143 Query: 117 FVACNFVPQQILMIPVRDLTLSLGLFNTITGMMLFHIAMQTGFCTLFLRNFIKQLPFEMI 176 + F+P Q+++ P+ + +GL+ ++TG+++ H TL RN+ +P E+ Sbjct: 144 LIVGAFIPYQVMIYPIVIILREIGLYGSLTGLVIVHSIFGMPILTLLFRNYFTSMPEELF 203 Query: 177 EAARIEGASEWTVFYRIVLPLIRPALAALAVLVFTFVWNDYFWALVLTQGDDVAPITVGV 236 AAR++GA W ++ RI+LP+ P +L T +WND+ + +V T+ D P+TV + Sbjct: 204 RAARVDGAGFWGIYLRIMLPMSLPIFVVAVILQVTGIWNDFLFGVVYTR-PDTYPMTVQL 262 Query: 237 AALRG--QWTTAWNLVSAGSILAALPSVILFFVMQKQFVAGLTFGASKG 283 + Q +N+ A +IL L ++++F+ + FV G+ GA KG Sbjct: 263 NNIVNSVQGVKEYNVNMAATILTGLVPLVIYFISGRLFVRGIAAGAVKG 311