BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0246.p         (90 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z0347 [R] COG1073 Hydrolases of the alpha/beta superfamily EcZ E...    28   6.0  
ECs0310 [R] COG1073 Hydrolases of the alpha/beta superfamily Ecs...    28   6.8  
sll1946 [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and ...    28   7.0  
YOR346w_2 [L] COG0389 Nucleotidyltransferase/DNA polymerase invo...    27   8.6  
SMb21592 [G] COG3839 ABC-type sugar transport systems, ATPase co...    27   10.0 

>Z0347 [R] COG1073 Hydrolases of the alpha/beta superfamily EcZ
           Escherichia coli O157:H7 EDL933
          Length = 352

 Score = 27.7 bits (60), Expect = 6.0,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 37/80 (46%)

Query: 2   ARLSCINESGARKRQAGLFIPKEKLMNTDNGNWLSAEQAVLPDGTERVNLPLVKKKLPLF 61
           A L  +NE   +  Q+G F      +N D+   +SA + +LP+       P++K+    +
Sbjct: 191 AVLQYLNEQRWKDAQSGTFAHGGHDINVDSNGKVSAGERILPETLPANPHPVLKEFFDYY 250

Query: 62  SPEQGSREEPESTSASTTTT 81
              +G  E   +++ + T T
Sbjct: 251 RMPRGFHERSVNSTGAWTAT 270


>ECs0310 [R] COG1073 Hydrolases of the alpha/beta superfamily Ecs
           Escherichia coli O157:H7
          Length = 378

 Score = 27.7 bits (60), Expect = 6.8,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 37/80 (46%)

Query: 2   ARLSCINESGARKRQAGLFIPKEKLMNTDNGNWLSAEQAVLPDGTERVNLPLVKKKLPLF 61
           A L  +NE   +  Q+G F      +N D+   +SA + +LP+       P++K+    +
Sbjct: 217 AVLQYLNEQRWKDAQSGTFAHGGHDINVDSNGKVSAGERILPETLPANPHPVLKEFFDYY 276

Query: 62  SPEQGSREEPESTSASTTTT 81
              +G  E   +++ + T T
Sbjct: 277 RMPRGFHERSVNSTGAWTAT 296


>sll1946 [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related
           glycosyltransferases of PMT family Syn Synechocystis
          Length = 825

 Score = 27.7 bits (60), Expect = 7.0,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 1/54 (1%)

Query: 31  NGNWLSAEQAVLPDGTERVNLPLVKKKLPLFSPEQGSREEPESTSASTTTTTTP 84
           NGN+ + +   LPDG+E +NL   ++      P Q + E P+ T     T+  P
Sbjct: 503 NGNFTAVQTWPLPDGSE-LNLWHRRQPRVEVKPSQINTELPQLTKVDLPTSAPP 555


>YOR346w_2 [L] COG0389 Nucleotidyltransferase/DNA polymerase involved in DNA
           repair Sce Saccharomyces cerevisiae
          Length = 644

 Score = 27.3 bits (59), Expect = 8.6,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 20/32 (62%)

Query: 31  NGNWLSAEQAVLPDGTERVNLPLVKKKLPLFS 62
           NG W+S  + +LP+G + ++LP   ++  L S
Sbjct: 73  NGMWVSQAEKMLPNGIKLISLPYTFEQFQLKS 104


>SMb21592 [G] COG3839 ABC-type sugar transport systems, ATPase components Sme
           Sinorhizobium meliloti
          Length = 383

 Score = 27.3 bits (59), Expect = 10.0,   Method: Composition-based stats.
 Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 45  GTERVNLPLVKKKLPLFSPEQGSREEPEST--SASTTTTTTPVDAKTT 90
           G E + L +  K+L LF  E G R EP+     A  T+   P  A  T
Sbjct: 332 GGELIGLAIDPKQLHLFDAETGKRLEPQKAPLDAQITSRAAPHPAAAT 379