BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0232.p         (141 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4111 Non COG                                                        134   7e-32
SA2427 [E] COG0078 Ornithine carbamoyltransferase Sau Staphyloco...    31   0.69 
CC2148 [R] COG0488 ATPase components of ABC transporters with du...    30   1.4  
MTH1742 [D] COG0037 Predicted ATPase of the PP-loop superfamily ...    29   3.4  
MT0966_2 [R] COG0491 Zn-dependent hydrolases, including glyoxyla...    28   5.5  

>PA4111 Non COG
          Length = 132

 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 72/133 (54%), Positives = 93/133 (69%), Gaps = 6/133 (4%)

Query: 1   MPAARPLRKECPPGACDCQREALLECLHAPEA--RVLWLTREEEKRLIERITRVASYEEL 58
           M A+ PLR+ CPPGAC C+RE L     AP A  R+L LTR+EE+RL  R+  + S E+L
Sbjct: 1   MSASPPLRQPCPPGACVCERERL----EAPGADRRILLLTRQEEQRLAARLEALRSLEDL 56

Query: 59  LHVGSLMRKNLGIHLHISPGPNEVRTVRGLQIHLAEQPGLCRKTRETIPAAIRKCLENNP 118
            H+   M + LGI L I+P   EVR++RG+++   EQPGLCRKTR+ IPAAIR+ LE  P
Sbjct: 57  EHLLRRMEEQLGIRLRIAPAFGEVRSMRGIRMRFEEQPGLCRKTRQAIPAAIRRGLEKRP 116

Query: 119 TIVYALLDAHDLL 131
            + YALL+AHDLL
Sbjct: 117 EVAYALLNAHDLL 129


>SA2427 [E] COG0078 Ornithine carbamoyltransferase Sau Staphylococcus
           aureus N315
          Length = 336

 Score = 31.2 bits (69), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 35  LWLTREEEKRLIERITRVASYEELLHVGSLMRKNLGIHLHISPGPNEVRTVRGLQIHLAE 94
           +W++  EE    +RI  +  Y+    +  L  K+  I LH  P  ++  T+ G +I+  E
Sbjct: 237 VWVSMGEESEFEQRINLLKDYQVNQQMFDLTGKDSTIFLHCLPAFHDTNTLYGQEIY--E 294

Query: 95  QPGLC 99
           + GL 
Sbjct: 295 KYGLA 299


>CC2148 [R] COG0488 ATPase components of ABC transporters with duplicated
           ATPase domains Ccr Caulobacter vibrioides
          Length = 555

 Score = 30.4 bits (67), Expect = 1.4,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 11/70 (15%)

Query: 31  EARVLWLTREEE-------KRLIERITRVASYEELLHVGSLMR-KNLGIHLHISPGP--- 79
           EAR   LTRE E        R  +   R+ASYEE++      R      H+ I PGP   
Sbjct: 261 EARQRALTRELEWVRSSPKARQSKSKARLASYEEMVAAQENARAAQTQAHIQIPPGPRLG 320

Query: 80  NEVRTVRGLQ 89
           N V  V GL+
Sbjct: 321 NLVLEVNGLE 330


>MTH1742 [D] COG0037 Predicted ATPase of the PP-loop superfamily implicated
           in cell cycle control Mth Methanothermobacter
           thermautotrophicus
          Length = 270

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/44 (34%), Positives = 21/44 (47%)

Query: 86  RGLQIHLAEQPGLCRKTRETIPAAIRKCLENNPTIVYALLDAHD 129
           RGL +HLA  P      R  I   +++     PTI+Y+ L   D
Sbjct: 184 RGLDVHLAGCPYASGSFRREIGDFLKQISVKRPTIMYSTLRGFD 227


>MT0966_2 [R] COG0491 Zn-dependent hydrolases, including glyoxylases MtC
           Mycobacterium tuberculosis CDC1551
          Length = 342

 Score = 28.1 bits (61), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 78  GPNEVRTVRGLQIHLAEQPGLCRKTRETIPAAI 110
           GP+ +R VRG   H+AEQ     +   ++P A+
Sbjct: 257 GPDGIRAVRGYLAHIAEQAEAAYRKGLSLPEAV 289