BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0221.p (227 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa0079 [E] COG0765 ABC-type amino acid transport system, permea... 197 1e-50 AGl383 [E] COG0765 ABC-type amino acid transport system, permeas... 187 2e-47 AGc2567 [E] COG0765 ABC-type amino acid transport system, permea... 184 1e-46 AGl664 [E] COG0765 ABC-type amino acid transport system, permeas... 182 7e-46 SMa0501 [E] COG0765 ABC-type amino acid transport system, permea... 173 3e-43 >SMa0079 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 222 Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 100/216 (46%), Positives = 147/216 (68%) Query: 3 YEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGYVE 62 YEF+FA V A + LL GAW T++LS A L+G ++ V CA + + L + GY+E Sbjct: 2 YEFNFAPVLASFDQLLVGAWLTVRLSCAAMLIGLVVSVFCAWGKTAGPAILRHVIDGYIE 61 Query: 63 LIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQIE 122 +IRNTP L+Q +F+ FG+ S+G+ + + A +ALV+N GAY EI+RAGIESI GQ+E Sbjct: 62 IIRNTPFLVQIFFIFFGMPSLGLRLSPNSAALLALVVNFGAYGTEIIRAGIESIHKGQVE 121 Query: 123 AAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRVQS 182 A LGLS Q+ R+VV++PA+ V+PALTSQF+ +ML +S++S + A++L N +QS Sbjct: 122 AGWALGLSRPQIFRYVVMKPALRTVYPALTSQFIYLMLNTSVVSVISADDLAAAGNDLQS 181 Query: 183 DTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAFT 218 TF +FEV++ + ++YLALS A F+ L + AF Sbjct: 182 ATFASFEVYIAVTLIYLALSVGFSALFYALEKAAFK 217 >AGl383 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 234 Score = 187 bits (475), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 101/229 (44%), Positives = 144/229 (62%), Gaps = 2/229 (0%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGY 60 M Y F F ++A + LL G W TI+LS L+ +LG G++ A R G + V GY Sbjct: 1 MSYTFQFGALAQYQNELLSGIWLTIKLSVLSIVLGCAFGILLASLRSINGGIVRIIVDGY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQ 120 VE+IRNTP L+Q + + FGL +G + A + + IN+ AYS EI+RAGIE++ Q Sbjct: 61 VEVIRNTPFLVQLFIVYFGLPGLGFRVGADTAALIGMTINLAAYSTEIIRAGIEAVHKSQ 120 Query: 121 IEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 IEA LG + Q+ RHV++ PA+ +V+P+L SQFVLMMLASSI S++ EL A V Sbjct: 121 IEAGEALGFTKYQIYRHVIIVPAIAKVYPSLCSQFVLMMLASSICSAISTHELAAAAAFV 180 Query: 181 QSDTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAFTRR--RKLGTPL 227 +S T+R+FEV++V+ ++YLAL+ +R ++G F RR RK T L Sbjct: 181 ESQTYRSFEVYIVVTLIYLALALSLRLILALVGMWLFGRRVARKTMTAL 229 >AGc2567 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 223 Score = 184 bits (468), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 100/220 (45%), Positives = 144/220 (65%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGY 60 M Y FDF + ++ + +G T++L + +LG LG+ CA R WL V Y Sbjct: 1 MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQ 120 VELIRNTP LIQ +F+ FGL S+G+ + ++ A +A+V+N+GAYSCEI+RAGI++ GQ Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQ 120 Query: 121 IEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 EA L ++ + RHVVL P+++R+WPAL+SQ V++ML SS++S + AE+L AN + Sbjct: 121 FEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVMLGSSVVSQIAAEDLTFAANFI 180 Query: 181 QSDTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAFTRR 220 QS TFR FE ++V V+YL L+ L+R M G L F RR Sbjct: 181 QSRTFRAFEAYMVSTVIYLVLAILLRQLLVMGGNLIFPRR 220 >AGl664 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 270 Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 139/218 (63%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGY 60 M Y DF++V LL +TI L+ L +LGV+ VAR SR L V G+ Sbjct: 49 MSYSLDFSAVIERLPELLLACLATIGLAIAGMSLATVLGVLGVVARRSRFKLLRGLVIGF 108 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQ 120 VE IRNTP L+Q +F+ F L +GI + A +AL +N GAY+ EI+R G++SI GQ Sbjct: 109 VEAIRNTPFLVQIFFIFFALPQIGIKLNPTVTAIIALALNGGAYAIEIIRGGVDSIPKGQ 168 Query: 121 IEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EA LGL Q+ RH++L+PA+ V+P+LTSQF+++ L +S+ +S+ A EL VA ++ Sbjct: 169 VEAGLALGLHRAQIFRHIILKPALRAVYPSLTSQFIMLTLTTSVCTSIAAYELTSVAQKI 228 Query: 181 QSDTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAFT 218 ++DTFR+FEV+ + +LYL +S LM F ++ + +F+ Sbjct: 229 EADTFRSFEVYFSITLLYLVISSLMMGIFALISRASFS 266 >SMa0501 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 228 Score = 173 bits (439), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 137/222 (61%) Query: 1 MHYEFDFASVAAHWLLLLQGAWSTIQLSFLATLLGFLLGVVCAVARGSRHGWLCAAVGGY 60 M Y F F + + ++ G W TI LSF+ G LG+ CAV V Y Sbjct: 1 MDYTFQFGPLLNYLPQIVSGLWLTIGLSFVGIFGGIALGIFCAVMSTLSSPIPRLLVRLY 60 Query: 61 VELIRNTPLLIQCYFLIFGLSSVGITMPVMAGATMALVINIGAYSCEIVRAGIESIQHGQ 120 VE++RNTPLL+Q + + FGL ++GI + + +ALV+N G Y EIVR GIE+ Q Sbjct: 61 VEVVRNTPLLVQIFVIFFGLPNIGIRLSPLTSVFIALVLNNGGYVAEIVRGGIEATHRSQ 120 Query: 121 IEAAHCLGLSPLQVLRHVVLQPAVERVWPALTSQFVLMMLASSILSSVGAEELLGVANRV 180 +EAA LGLS Q LR+V+L PA+E+V+ + SQ VL+ML++S++S++G E+L G A Sbjct: 121 VEAAESLGLSYFQTLRYVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIA 180 Query: 181 QSDTFRNFEVFLVLWVLYLALSCLMRAGFWMLGQLAFTRRRK 222 S+TFR E++LV+ ++Y+ L+ + RA + G + FTR R+ Sbjct: 181 SSETFRTMEIYLVVAMVYVVLNFVFRAVLNVAGLMIFTRSRR 222