BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0178.p         (161 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0046 [T] COG1734 DnaK suppressor protein Rso Ralstonia solana...   227   9e-60
NMA0213 [T] COG1734 DnaK suppressor protein NmA Neisseria mening...   160   1e-39
NMB0056 [T] COG1734 DnaK suppressor protein Nme Neisseria mening...   159   2e-39
AGc2513 [T] COG1734 DnaK suppressor protein Atu Agrobacterium tu...   131   7e-31
SMc00469 [T] COG1734 DnaK suppressor protein Sme Sinorhizobium m...   131   8e-31

>RSc0046 [T] COG1734 DnaK suppressor protein Rso Ralstonia solanacearum
          Length = 139

 Score =  227 bits (578), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 125/137 (91%)

Query: 25  AAQLLSEEEILKMDEKDYMNEAQLAFFKARLQQLEKDLLKNADETTEHLRETVLVPDPAD 84
           + +LL+E EILKM +KDYMNEAQLAFFK RL++L  D+LKNA +TTEHLRETV+VPDPAD
Sbjct: 3   SKKLLTEAEILKMGDKDYMNEAQLAFFKDRLEKLRDDILKNAGQTTEHLRETVIVPDPAD 62

Query: 85  RATIEEEHALELRTRDRERKLLKKVQQSIVAIDNGEYGWCEETGEPIGIPRLLARPTATL 144
           RATIEEEHALELRTRDRERKLLKKV+QSI  ID G YG+C+ETGEPIGIPRLLARPTATL
Sbjct: 63  RATIEEEHALELRTRDRERKLLKKVEQSIARIDEGNYGYCDETGEPIGIPRLLARPTATL 122

Query: 145 SLEAQQRRELKQKLYGD 161
           +LEAQ+RRE +QKL+GD
Sbjct: 123 TLEAQERREKRQKLFGD 139


>NMA0213 [T] COG1734 DnaK suppressor protein NmA Neisseria meningitidis
           Z2491
          Length = 138

 Score =  160 bits (405), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 105/135 (77%), Gaps = 2/135 (1%)

Query: 29  LSEEEILKMD--EKDYMNEAQLAFFKARLQQLEKDLLKNADETTEHLRETVLVPDPADRA 86
           L+E++IL  +  E DYMN+  LAFF+  L +++ +L++NA  TT HL+E    PDPADRA
Sbjct: 4   LTEQDILNWNGPEDDYMNDEHLAFFRELLVKMQDELIENASATTGHLQEHESAPDPADRA 63

Query: 87  TIEEEHALELRTRDRERKLLKKVQQSIVAIDNGEYGWCEETGEPIGIPRLLARPTATLSL 146
           T EEE+ALELRTRDRERKLL K+Q +I  ID G+YG+C +TGEPIG+ RLLARPTATLS+
Sbjct: 64  TQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCADTGEPIGLKRLLARPTATLSV 123

Query: 147 EAQQRRELKQKLYGD 161
           E+Q+RRE  +K + D
Sbjct: 124 ESQERRERMKKQFAD 138


>NMB0056 [T] COG1734 DnaK suppressor protein Nme Neisseria meningitidis MC58
          Length = 138

 Score =  159 bits (403), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 80/135 (59%), Positives = 104/135 (77%), Gaps = 2/135 (1%)

Query: 29  LSEEEILKMD--EKDYMNEAQLAFFKARLQQLEKDLLKNADETTEHLRETVLVPDPADRA 86
           L+E++IL     E DYMN+  LAFF+  L +++ +L++NA  TT HL+E    PDPADRA
Sbjct: 4   LTEQDILNWSGPEDDYMNDDHLAFFRELLVKMQDELIENASATTGHLQEHESAPDPADRA 63

Query: 87  TIEEEHALELRTRDRERKLLKKVQQSIVAIDNGEYGWCEETGEPIGIPRLLARPTATLSL 146
           T EEE+ALELRTRDRERKLL K+Q +I  ID G+YG+C +TGEPIG+ RLLARPTATLS+
Sbjct: 64  TQEEEYALELRTRDRERKLLSKIQATIRNIDEGDYGFCADTGEPIGLKRLLARPTATLSV 123

Query: 147 EAQQRRELKQKLYGD 161
           E+Q+RRE  +K + D
Sbjct: 124 ESQERRERMKKQFAD 138


>AGc2513 [T] COG1734 DnaK suppressor protein Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 148

 Score =  131 bits (329), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 64/122 (52%), Positives = 90/122 (73%), Gaps = 1/122 (0%)

Query: 41  DYMNEAQLAFFKARLQQLEKDLLKNADETTEHL-RETVLVPDPADRATIEEEHALELRTR 99
           ++MN +Q A+F+A+L   + D+L+ A ET  HL  E+   PD ADRA+ E + A+ELR R
Sbjct: 26  EFMNASQRAYFRAKLIAWKNDILREARETLGHLAEESANHPDLADRASSETDRAIELRAR 85

Query: 100 DRERKLLKKVQQSIVAIDNGEYGWCEETGEPIGIPRLLARPTATLSLEAQQRRELKQKLY 159
           DR+RKL+ K+  ++  ID+G YG+CEETGEPIG+ RL ARP ATLS+EAQ+R E ++K+Y
Sbjct: 86  DRQRKLISKIDAALQRIDDGTYGYCEETGEPIGLKRLDARPIATLSIEAQERHERREKVY 145

Query: 160 GD 161
            D
Sbjct: 146 RD 147


>SMc00469 [T] COG1734 DnaK suppressor protein Sme Sinorhizobium meliloti
          Length = 139

 Score =  131 bits (329), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 91/129 (70%), Gaps = 2/129 (1%)

Query: 34  ILKMDEKDYMNEAQLAFFKARLQQLEKDLLKNADETTEHL-RETVLVPDPADRATIEEEH 92
           +L  DE D+MN    A+F+A+L     D+L+ A ET +HL  E+   PD ADRA+ E + 
Sbjct: 11  VLSEDE-DFMNANHRAYFRAKLNAWRNDILREARETLDHLAEESANHPDLADRASSETDR 69

Query: 93  ALELRTRDRERKLLKKVQQSIVAIDNGEYGWCEETGEPIGIPRLLARPTATLSLEAQQRR 152
           A+ELR RDR+RKL+ K+  ++  +D G YG+CEETGEPIG+ RL ARP ATLS+EAQ+R 
Sbjct: 70  AIELRARDRQRKLIAKIDAALQRLDEGTYGYCEETGEPIGLKRLDARPIATLSIEAQERH 129

Query: 153 ELKQKLYGD 161
           E ++K+Y D
Sbjct: 130 ERREKVYRD 138