BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0145.p         (121 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2996 [J] COG0099 Ribosomal protein S13 Rso Ralstonia solanace...   200   5e-52
PM1393 [J] COG0099 Ribosomal protein S13 Pmu Pasteurella multocida    187   6e-48
PA4241 [J] COG0099 Ribosomal protein S13 Pae Pseudomonas aeruginosa   182   2e-46
rpsM [J] COG0099 Ribosomal protein S13 Eco Escherichia coli K12       180   8e-46
ZrpsM [J] COG0099 Ribosomal protein S13 EcZ Escherichia coli O15...   180   8e-46

>RSc2996 [J] COG0099 Ribosomal protein S13 Rso Ralstonia solanacearum
          Length = 121

 Score =  200 bits (509), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 97/121 (80%), Positives = 109/121 (90%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAGVNIPNH+HTVIGLTAIYGIGR RA+ IC ATG+PT+KKVKDL D + + LR EI
Sbjct: 1   MARIAGVNIPNHKHTVIGLTAIYGIGRSRARKICEATGIPTDKKVKDLTDPDQDALRKEI 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKAAQSLK 120
            KF+VEGDLRRE +MNIKRLMDLGCYRG+RHR+GLP+RGQRTRTNARTRKGPRKA  +LK
Sbjct: 61  EKFLVEGDLRRETTMNIKRLMDLGCYRGVRHRKGLPLRGQRTRTNARTRKGPRKAGVALK 120

Query: 121 K 121
           K
Sbjct: 121 K 121


>PM1393 [J] COG0099 Ribosomal protein S13 Pmu Pasteurella multocida
          Length = 118

 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 103/114 (90%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAG+NIP+H+HTVI LTAIYGIG+ RAQ ICAATG+  + K+ +L + +++KLRDE+
Sbjct: 1   MARIAGINIPDHKHTVIALTAIYGIGKTRAQAICAATGIAEDVKISELSEEQIDKLRDEV 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRK 114
            KF VEGDLRRE+++NIKRL+DLGCYRGLRHRRGLPVRGQRT+TNARTRKGPRK
Sbjct: 61  GKFTVEGDLRREVTLNIKRLLDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 114


>PA4241 [J] COG0099 Ribosomal protein S13 Pae Pseudomonas aeruginosa
          Length = 118

 Score =  182 bits (462), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 86/114 (75%), Positives = 100/114 (87%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAGVNIP+++HTVI LT IYG+GR  AQ ICAATGV    K+KDL D ++++LR+E+
Sbjct: 1   MARIAGVNIPDNKHTVISLTYIYGVGRTTAQSICAATGVNPAAKIKDLSDEQIDQLRNEV 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRK 114
           AK   EGDLRRE++MNIKRLMDLGCYRGLRHRRGLPVRGQRT+TNARTRKGPRK
Sbjct: 61  AKITTEGDLRREINMNIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 114


>rpsM [J] COG0099 Ribosomal protein S13 Eco Escherichia coli K12
          Length = 118

 Score =  180 bits (456), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 101/114 (88%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAG+NIP+H+H VI LT+IYG+G+ R++ I AA G+  + K+ +L + +++ LRDE+
Sbjct: 1   MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRK 114
           AKFVVEGDLRRE+SM+IKRLMDLGCYRGLRHRRGLPVRGQRT+TNARTRKGPRK
Sbjct: 61  AKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 114


>ZrpsM [J] COG0099 Ribosomal protein S13 EcZ Escherichia coli O157:H7
           EDL933
          Length = 118

 Score =  180 bits (456), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 81/114 (71%), Positives = 101/114 (88%)

Query: 1   MARIAGVNIPNHQHTVIGLTAIYGIGRPRAQDICAATGVPTNKKVKDLDDNELEKLRDEI 60
           MARIAG+NIP+H+H VI LT+IYG+G+ R++ I AA G+  + K+ +L + +++ LRDE+
Sbjct: 1   MARIAGINIPDHKHAVIALTSIYGVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEV 60

Query: 61  AKFVVEGDLRRELSMNIKRLMDLGCYRGLRHRRGLPVRGQRTRTNARTRKGPRK 114
           AKFVVEGDLRRE+SM+IKRLMDLGCYRGLRHRRGLPVRGQRT+TNARTRKGPRK
Sbjct: 61  AKFVVEGDLRREISMSIKRLMDLGCYRGLRHRRGLPVRGQRTKTNARTRKGPRK 114