BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0144.p         (37 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

VC2575 [J] COG0257 Ribosomal protein L36 Vch Vibrio cholerae           67   9e-12
RSc2997 [J] COG0257 Ribosomal protein L36 Rso Ralstonia solanace...    65   4e-11
PM1394 [J] COG0257 Ribosomal protein L36 Pmu Pasteurella multocida     63   2e-10
HI0798.1 [J] COG0257 Ribosomal protein L36 Hin Haemophilus influ...    62   2e-10
YPO0230 [J] COG0257 Ribosomal protein L36 Ype Yersinia pestis          62   3e-10

>VC2575 [J] COG0257 Ribosomal protein L36 Vch Vibrio cholerae
          Length = 37

 Score = 67.4 bits (163), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 32/37 (86%), Positives = 36/37 (97%)

Query: 1  MKVLASVKRICRNCKIIKRNGVVRVICTEPRHKQRQG 37
          MKV ASVK+ICRNCK+IKRNGVVRVIC+EP+HKQRQG
Sbjct: 1  MKVRASVKKICRNCKVIKRNGVVRVICSEPKHKQRQG 37


>RSc2997 [J] COG0257 Ribosomal protein L36 Rso Ralstonia solanacearum
          Length = 38

 Score = 65.1 bits (157), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 34/38 (89%), Positives = 36/38 (94%), Gaps = 1/38 (2%)

Query: 1  MKVLASVKRICRNCKIIKRNGVVRVIC-TEPRHKQRQG 37
          MKVLASVKRICRNCKIIKR GVVRVIC ++PRHKQRQG
Sbjct: 1  MKVLASVKRICRNCKIIKRKGVVRVICSSDPRHKQRQG 38


>PM1394 [J] COG0257 Ribosomal protein L36 Pmu Pasteurella multocida
          Length = 37

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 35/37 (94%)

Query: 1  MKVLASVKRICRNCKIIKRNGVVRVICTEPRHKQRQG 37
          MKV ASVK++CRNCKI+KR GVVRV+C++P+HKQRQG
Sbjct: 1  MKVRASVKKLCRNCKIVKREGVVRVLCSDPKHKQRQG 37


>HI0798.1 [J] COG0257 Ribosomal protein L36 Hin Haemophilus influenzae
          Length = 37

 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 28/37 (75%), Positives = 35/37 (94%)

Query: 1  MKVLASVKRICRNCKIIKRNGVVRVICTEPRHKQRQG 37
          MKV ASVK++CRNCKI+KR GVVRV+C++P+HKQRQG
Sbjct: 1  MKVRASVKKMCRNCKIVKREGVVRVLCSDPKHKQRQG 37


>YPO0230 [J] COG0257 Ribosomal protein L36 Ype Yersinia pestis
          Length = 38

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/38 (81%), Positives = 36/38 (94%), Gaps = 1/38 (2%)

Query: 1  MKVLASVKRICRNCKIIKRNGVVRVICT-EPRHKQRQG 37
          MKV ASVK++CRNCKI+KRNGVVRVIC+ EP+HKQRQG
Sbjct: 1  MKVRASVKKLCRNCKIVKRNGVVRVICSAEPKHKQRQG 38