BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0141.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

NMB0161 [J] COG0200 Ribosomal protein L15 Nme Neisseria meningit...   199   1e-51
NMA0110 [J] COG0200 Ribosomal protein L15 NmA Neisseria meningit...   198   3e-51
RSc3000 [J] COG0200 Ribosomal protein L15 Rso Ralstonia solanace...   194   4e-50
VC2577 [J] COG0200 Ribosomal protein L15 Vch Vibrio cholerae          164   6e-41
PM1396 [J] COG0200 Ribosomal protein L15 Pmu Pasteurella multocida    164   6e-41

>NMB0161 [J] COG0200 Ribosomal protein L15 Nme Neisseria meningitidis MC58
          Length = 144

 Score =  199 bits (507), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 115/142 (80%)

Query: 1   MQLNTIQPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRR 60
           M LNTIQPA GA HA RRVGRGIGSGLGKT GRGHKGQKSRSGGFHKVGFEGGQMPLQRR
Sbjct: 1   MFLNTIQPAVGATHAGRRVGRGIGSGLGKTGGRGHKGQKSRSGGFHKVGFEGGQMPLQRR 60

Query: 61  LPKRGFKSLATPYKAEVRLSDLEKLPVAEIDVLALKQAGLVSELARVVRIIKAGELTKKV 120
           LPKRGFKSL     A++RLS+LE + V EID+L LKQAGL++     V++I +GE++K V
Sbjct: 61  LPKRGFKSLTASANAQLRLSELESIAVNEIDILVLKQAGLIASTVSNVKVIASGEISKAV 120

Query: 121 TVKGLIATAGAKAAIEAAGGSI 142
            +KG+  T GA+AAIEA GG I
Sbjct: 121 ALKGIKVTKGARAAIEAVGGKI 142


>NMA0110 [J] COG0200 Ribosomal protein L15 NmA Neisseria meningitidis Z2491
          Length = 144

 Score =  198 bits (503), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 100/142 (70%), Positives = 114/142 (80%)

Query: 1   MQLNTIQPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRR 60
           M LNTIQPA GA HA RRVGRGIGSGLGKT GRGHKGQKSRSGGFHKVGFEGGQMPLQRR
Sbjct: 1   MFLNTIQPAVGATHAGRRVGRGIGSGLGKTGGRGHKGQKSRSGGFHKVGFEGGQMPLQRR 60

Query: 61  LPKRGFKSLATPYKAEVRLSDLEKLPVAEIDVLALKQAGLVSELARVVRIIKAGELTKKV 120
           LPKRGFKSL     A++RLS+LE + V EID+L LKQAGL++     V++I  GE++K V
Sbjct: 61  LPKRGFKSLTASANAQLRLSELESIAVNEIDILVLKQAGLIASTVSNVKVIAFGEISKAV 120

Query: 121 TVKGLIATAGAKAAIEAAGGSI 142
            +KG+  T GA+AAIEA GG I
Sbjct: 121 ALKGIKVTKGARAAIEAVGGKI 142


>RSc3000 [J] COG0200 Ribosomal protein L15 Rso Ralstonia solanacearum
          Length = 143

 Score =  194 bits (494), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 97/128 (75%), Positives = 108/128 (84%)

Query: 1   MQLNTIQPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRR 60
           MQLN ++PA G+KHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPL RR
Sbjct: 1   MQLNNLKPAAGSKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLHRR 60

Query: 61  LPKRGFKSLATPYKAEVRLSDLEKLPVAEIDVLALKQAGLVSELARVVRIIKAGELTKKV 120
           LPKRGF SL   + AEVRL DL  LPVAEID+L LKQAGLV EL +  ++I +G + KKV
Sbjct: 61  LPKRGFTSLTKEFTAEVRLGDLAGLPVAEIDLLTLKQAGLVGELVKSAKVILSGSIDKKV 120

Query: 121 TVKGLIAT 128
           T+KGL AT
Sbjct: 121 TLKGLGAT 128


>VC2577 [J] COG0200 Ribosomal protein L15 Vch Vibrio cholerae
          Length = 144

 Score =  164 bits (415), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 89/144 (61%), Positives = 108/144 (75%)

Query: 1   MQLNTIQPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRR 60
           M LNT+ PA G+KHA +R+GRG+GSGLGKT GRGHKGQKSRSGG  + GFEGGQMPL++R
Sbjct: 1   MLLNTLSPAAGSKHAPKRLGRGVGSGLGKTGGRGHKGQKSRSGGKVRPGFEGGQMPLKQR 60

Query: 61  LPKRGFKSLATPYKAEVRLSDLEKLPVAEIDVLALKQAGLVSELARVVRIIKAGELTKKV 120
           LPK GF S  +   AEVRLS+L K+    +D+ ALK A LV++     +I+ +GE+ K V
Sbjct: 61  LPKFGFTSRKSFVSAEVRLSELAKVTGDVVDLNALKAANLVTKNIEFAKIVLSGEINKAV 120

Query: 121 TVKGLIATAGAKAAIEAAGGSIAE 144
           TVKGL  T GAKAAIEAAGG I E
Sbjct: 121 TVKGLRVTKGAKAAIEAAGGKIEE 144


>PM1396 [J] COG0200 Ribosomal protein L15 Pmu Pasteurella multocida
          Length = 144

 Score =  164 bits (415), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/144 (60%), Positives = 109/144 (75%)

Query: 1   MQLNTIQPAEGAKHAKRRVGRGIGSGLGKTAGRGHKGQKSRSGGFHKVGFEGGQMPLQRR 60
           M+LNT+ PAEGAKH+ +R+GRGIGSGLGKT GRGHKGQKSR+GG  + GFEGGQMPL RR
Sbjct: 1   MRLNTLSPAEGAKHSAKRLGRGIGSGLGKTGGRGHKGQKSRTGGGVRRGFEGGQMPLYRR 60

Query: 61  LPKRGFKSLATPYKAEVRLSDLEKLPVAEIDVLALKQAGLVSELARVVRIIKAGELTKKV 120
           LPK GF S+     AEVRL+DL K+    + + +LK A ++++  + V+II AGE+   V
Sbjct: 61  LPKFGFTSMKAAVTAEVRLNDLAKVEGGVVTLESLKAANVITKDIQFVKIILAGEVKGAV 120

Query: 121 TVKGLIATAGAKAAIEAAGGSIAE 144
            V+GL  T GAKAAIEAAGGS+ E
Sbjct: 121 VVRGLRVTKGAKAAIEAAGGSVEE 144