BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0140.p         (59 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3001 [J] COG1841 Ribosomal protein L30/L7E Rso Ralstonia sola...    96   2e-20
VC2578 [J] COG1841 Ribosomal protein L30/L7E Vch Vibrio cholerae       71   5e-13
HI0796 [J] COG1841 Ribosomal protein L30/L7E Hin Haemophilus inf...    69   2e-12
NMB0160 [J] COG1841 Ribosomal protein L30/L7E Nme Neisseria meni...    69   3e-12
NMA0111 [J] COG1841 Ribosomal protein L30/L7E NmA Neisseria meni...    69   3e-12

>RSc3001 [J] COG1841 Ribosomal protein L30/L7E Rso Ralstonia solanacearum
          Length = 60

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/54 (83%), Positives = 53/54 (98%)

Query: 5  IKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVV 58
          +KV+LV+ LIGTR+DHRATVRGLGLRR+NSVSEL+DTP+VRGMINKVSYLVKV+
Sbjct: 6  VKVQLVRSLIGTREDHRATVRGLGLRRLNSVSELQDTPAVRGMINKVSYLVKVI 59


>VC2578 [J] COG1841 Ribosomal protein L30/L7E Vch Vibrio cholerae
          Length = 58

 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/54 (64%), Positives = 40/54 (74%)

Query: 4  TIKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKV 57
          TIKV   K  IG    H+AT+RGLGLR++N   ELEDTP VRGMINKV Y+VKV
Sbjct: 3  TIKVTQTKSSIGRLPKHKATLRGLGLRKINHTVELEDTPCVRGMINKVYYMVKV 56


>HI0796 [J] COG1841 Ribosomal protein L30/L7E Hin Haemophilus influenzae
          Length = 59

 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 1  MANTIKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKV 57
          MA TIKV  V+  I     H+AT+RGLGLR ++   EL DTP+VRGMIN+VSY+VKV
Sbjct: 1  MAKTIKVTQVRSSIARLPKHKATLRGLGLRHIHHTVELIDTPAVRGMINQVSYMVKV 57


>NMB0160 [J] COG1841 Ribosomal protein L30/L7E Nme Neisseria meningitidis
          MC58
          Length = 61

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 40/55 (72%)

Query: 5  IKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVVS 59
          I+V LVK LIGT + HRA  RGLGLRR     E+ DTP  RGMINK+SYL+KV S
Sbjct: 7  IRVTLVKSLIGTIESHRACARGLGLRRREHTVEVLDTPENRGMINKISYLLKVES 61


>NMA0111 [J] COG1841 Ribosomal protein L30/L7E NmA Neisseria meningitidis
          Z2491
          Length = 61

 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/55 (63%), Positives = 40/55 (72%)

Query: 5  IKVKLVKGLIGTRQDHRATVRGLGLRRVNSVSELEDTPSVRGMINKVSYLVKVVS 59
          I+V LVK LIGT + HRA  RGLGLRR     E+ DTP  RGMINK+SYL+KV S
Sbjct: 7  IRVTLVKSLIGTIESHRACARGLGLRRREHTVEVLDTPENRGMINKISYLLKVES 61