BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0133.p         (104 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4252 [J] COG0198 Ribosomal protein L24 Pae Pseudomonas aeruginosa   121   4e-28
rplX [J] COG0198 Ribosomal protein L24 Eco Escherichia coli K12       120   9e-28
ZrplX [J] COG0198 Ribosomal protein L24 EcZ Escherichia coli O15...   120   9e-28
STM3429 [J] COG0198 Ribosomal protein L24 Sty Salmonella typhimu...   120   9e-28
ECs4174 [J] COG0198 Ribosomal protein L24 Ecs Escherichia coli O...   120   9e-28

>PA4252 [J] COG0198 Ribosomal protein L24 Pae Pseudomonas aeruginosa
          Length = 104

 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 76/103 (73%)

Query: 1   MAKIRKNDEVIVLTGKDKGKRGVVTARVGTDYVVVEGVNVAKKATRPNPMTGATGGIVDK 60
           M KIR++DEVIV+ GKDKGKRG V   +  D +VV GVN+ K+ T+PNPM G  GGIV+K
Sbjct: 1   MQKIRRDDEVIVIAGKDKGKRGKVLKVLADDRLVVGGVNLIKRHTKPNPMLGQQGGIVEK 60

Query: 61  LMPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVK 103
             P+HVSNVA+FN  T KADRV +K  DGKK+R +KS  + V+
Sbjct: 61  EAPLHVSNVAIFNTETSKADRVGFKVEDGKKIRVFKSTQKPVQ 103


>rplX [J] COG0198 Ribosomal protein L24 Eco Escherichia coli K12
          Length = 104

 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 76/102 (74%)

Query: 2   AKIRKNDEVIVLTGKDKGKRGVVTARVGTDYVVVEGVNVAKKATRPNPMTGATGGIVDKL 61
           AKIR++DEVIVLTGKDKGKRG V   + +  V+VEG+N+ KK  +P P     GGIV+K 
Sbjct: 3   AKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKE 62

Query: 62  MPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVK 103
             I VSNVA+FNAATGKADRV ++  DGKKVR +KSN E +K
Sbjct: 63  AAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK 104


>ZrplX [J] COG0198 Ribosomal protein L24 EcZ Escherichia coli O157:H7
           EDL933
          Length = 104

 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 76/102 (74%)

Query: 2   AKIRKNDEVIVLTGKDKGKRGVVTARVGTDYVVVEGVNVAKKATRPNPMTGATGGIVDKL 61
           AKIR++DEVIVLTGKDKGKRG V   + +  V+VEG+N+ KK  +P P     GGIV+K 
Sbjct: 3   AKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKE 62

Query: 62  MPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVK 103
             I VSNVA+FNAATGKADRV ++  DGKKVR +KSN E +K
Sbjct: 63  AAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK 104


>STM3429 [J] COG0198 Ribosomal protein L24 Sty Salmonella typhimurium LT2
          Length = 104

 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 76/102 (74%)

Query: 2   AKIRKNDEVIVLTGKDKGKRGVVTARVGTDYVVVEGVNVAKKATRPNPMTGATGGIVDKL 61
           AKIR++DEVIVLTGKDKGKRG V   + +  V+VEG+N+ KK  +P P     GGIV+K 
Sbjct: 3   AKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKE 62

Query: 62  MPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVK 103
             I VSNVA+FNAATGKADRV ++  DGKKVR +KSN E +K
Sbjct: 63  AAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK 104


>ECs4174 [J] COG0198 Ribosomal protein L24 Ecs Escherichia coli O157:H7
          Length = 104

 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/102 (60%), Positives = 76/102 (74%)

Query: 2   AKIRKNDEVIVLTGKDKGKRGVVTARVGTDYVVVEGVNVAKKATRPNPMTGATGGIVDKL 61
           AKIR++DEVIVLTGKDKGKRG V   + +  V+VEG+N+ KK  +P P     GGIV+K 
Sbjct: 3   AKIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEGINLVKKHQKPVPALNQPGGIVEKE 62

Query: 62  MPIHVSNVALFNAATGKADRVAYKEVDGKKVRAYKSNGEVVK 103
             I VSNVA+FNAATGKADRV ++  DGKKVR +KSN E +K
Sbjct: 63  AAIQVSNVAIFNAATGKADRVGFRFEDGKKVRFFKSNSETIK 104