BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0131.p         (90 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3010 [J] COG0186 Ribosomal protein S17 Rso Ralstonia solanace...   120   9e-28
PM1406 [J] COG0186 Ribosomal protein S17 Pmu Pasteurella multocida    114   6e-26
HI0786 [J] COG0186 Ribosomal protein S17 Hin Haemophilus influenzae   111   3e-25
rpsQ [J] COG0186 Ribosomal protein S17 Eco Escherichia coli K12       110   6e-25
ZrpsQ [J] COG0186 Ribosomal protein S17 EcZ Escherichia coli O15...   110   6e-25

>RSc3010 [J] COG0186 Ribosomal protein S17 Rso Ralstonia solanacearum
          Length = 89

 Score =  120 bits (300), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 54/83 (65%), Positives = 70/83 (84%)

Query: 8  ALKRTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNSAKAGDVVEIT 67
          +LKRTL+G+VVS KMDKTVTV +E ++KHPLYGK + R+KKYHAHDE N  K GD VEI 
Sbjct: 7  SLKRTLVGRVVSSKMDKTVTVLVENRVKHPLYGKYVVRSKKYHAHDEANQYKEGDRVEIV 66

Query: 68 ESRPISKTKSWTVTRVVQEAQIV 90
          ESRPIS+TK+W V+R+V+ A+++
Sbjct: 67 ESRPISRTKAWVVSRLVEAARVI 89


>PM1406 [J] COG0186 Ribosomal protein S17 Pmu Pasteurella multocida
          Length = 85

 Score =  114 bits (285), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 64/79 (81%)

Query: 11 RTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNSAKAGDVVEITESR 70
          R++ GKVVSDKMDK+  V IER++KHPLYGK I+RT K H HDE N AK GD+VEI E R
Sbjct: 6  RSVQGKVVSDKMDKSFVVAIERKVKHPLYGKFIRRTTKLHVHDENNEAKLGDIVEIKECR 65

Query: 71 PISKTKSWTVTRVVQEAQI 89
          P+SKTKSWT+ RVV++A +
Sbjct: 66 PLSKTKSWTLVRVVEKAVV 84


>HI0786 [J] COG0186 Ribosomal protein S17 Hin Haemophilus influenzae
          Length = 85

 Score =  111 bits (278), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/79 (65%), Positives = 63/79 (79%)

Query: 11 RTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNSAKAGDVVEITESR 70
          R++ GKVVSDKM+K+  V IER++KHPLYGK I+RT K H HDE N AK GD VEI E R
Sbjct: 6  RSVQGKVVSDKMEKSFVVAIERKVKHPLYGKFIRRTTKLHVHDENNEAKVGDTVEIRECR 65

Query: 71 PISKTKSWTVTRVVQEAQI 89
          P+SKTKSWT+ RVV++A I
Sbjct: 66 PLSKTKSWTLVRVVEKAVI 84


>rpsQ [J] COG0186 Ribosomal protein S17 Eco Escherichia coli K12
          Length = 84

 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 61/77 (79%)

Query: 11 RTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNSAKAGDVVEITESR 70
          RTL G+VVSDKM+K++ V IER +KHP+YGK IKRT K H HDE N    GDVVEI E R
Sbjct: 6  RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECR 65

Query: 71 PISKTKSWTVTRVVQEA 87
          P+SKTKSWT+ RVV++A
Sbjct: 66 PLSKTKSWTLVRVVEKA 82


>ZrpsQ [J] COG0186 Ribosomal protein S17 EcZ Escherichia coli O157:H7
          EDL933
          Length = 84

 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 61/77 (79%)

Query: 11 RTLIGKVVSDKMDKTVTVEIERQMKHPLYGKIIKRTKKYHAHDEQNSAKAGDVVEITESR 70
          RTL G+VVSDKM+K++ V IER +KHP+YGK IKRT K H HDE N    GDVVEI E R
Sbjct: 6  RTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECR 65

Query: 71 PISKTKSWTVTRVVQEA 87
          P+SKTKSWT+ RVV++A
Sbjct: 66 PLSKTKSWTLVRVVEKA 82