BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0126.p (275 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3016 [J] COG0090 Ribosomal protein L2 Rso Ralstonia solanacearum 452 e-127 NMB0145 [J] COG0090 Ribosomal protein L2 Nme Neisseria meningiti... 440 e-123 PA4260 [J] COG0090 Ribosomal protein L2 Pae Pseudomonas aeruginosa 440 e-123 NMA0126 [J] COG0090 Ribosomal protein L2 NmA Neisseria meningiti... 437 e-122 YPO0213 [J] COG0090 Ribosomal protein L2 Ype Yersinia pestis 415 e-116 >RSc3016 [J] COG0090 Ribosomal protein L2 Rso Ralstonia solanacearum Length = 276 Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust. Identities = 221/276 (80%), Positives = 247/276 (89%), Gaps = 1/276 (0%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MALVK KPTSPGRR MVKVVNPDL+KG P A L+EK+ + +GRNNNGHITTRH GGGHK Sbjct: 1 MALVKTKPTSPGRRSMVKVVNPDLHKGAPHAPLLEKQFQKSGRNNNGHITTRHKGGGHKH 60 Query: 61 HYRVVDFRRN-KDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISG 119 HYR+VDF+RN KDGIPAK+ER+EYDPNR+A+IAL+ +ADGER+YIIAPKG VG + +G Sbjct: 61 HYRIVDFKRNDKDGIPAKIERLEYDPNRSANIALVLFADGERRYIIAPKGAVVGQAVANG 120 Query: 120 SEAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSG 179 EAPIK+GN LPIRNIPVGTTIHCVE+LPGKGAQIAR+AG + VL+AREG YAQVRLRSG Sbjct: 121 PEAPIKAGNNLPIRNIPVGTTIHCVEILPGKGAQIARSAGTSAVLLAREGIYAQVRLRSG 180 Query: 180 EVRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKT 239 EVRRVHIECRATIGEVGN EH+LR+IGKAGATRWRG+RPTVRGV MNPVDHPHGGGEGKT Sbjct: 181 EVRRVHIECRATIGEVGNEEHSLRQIGKAGATRWRGIRPTVRGVAMNPVDHPHGGGEGKT 240 Query: 240 AAGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 AAGR PVSPWG TKG +TRSNKRTTSMIV RR K+ Sbjct: 241 AAGRDPVSPWGTPTKGYRTRSNKRTTSMIVQRRHKR 276 >NMB0145 [J] COG0090 Ribosomal protein L2 Nme Neisseria meningitidis MC58 Length = 277 Score = 440 bits (1132), Expect = e-123, Method: Compositional matrix adjust. Identities = 211/272 (77%), Positives = 239/272 (87%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MA+VK+KPTS GRRGMV+VV LYKG P A L+EKK+ TAGRNNNGHITTRH GGGHK Sbjct: 1 MAIVKMKPTSAGRRGMVRVVTEGLYKGAPYAPLLEKKNSTAGRNNNGHITTRHKGGGHKH 60 Query: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 HYRVVDF+RNKDGIPAKVERIEYDPNRTA IALLCYADGER+YIIAP+G+ G L+SG+ Sbjct: 61 HYRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERRYIIAPRGIQAGAVLVSGA 120 Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 EA IK GNTLPIRNIPVGTTIHC+EM PGKGAQIAR+AGA+ VL+A+EG YAQVRLRSGE Sbjct: 121 EAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLAKEGAYAQVRLRSGE 180 Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 VR+++++CRATIGEVGN E +L+KIGKAGA RWRG+RPTVRGVVMNPVDHPHGGGEG+T Sbjct: 181 VRKINVDCRATIGEVGNEEQSLKKIGKAGANRWRGIRPTVRGVVMNPVDHPHGGGEGRTG 240 Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRR 272 R PVSPWG KG +TR+NKRT +MIV RR Sbjct: 241 EAREPVSPWGTPAKGYRTRNNKRTDNMIVRRR 272 >PA4260 [J] COG0090 Ribosomal protein L2 Pae Pseudomonas aeruginosa Length = 273 Score = 440 bits (1131), Expect = e-123, Method: Compositional matrix adjust. Identities = 212/272 (77%), Positives = 242/272 (88%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MA+VK KPTS GRR +VKVVN +L+KG P A L+EKKSK+ GRNNNG ITTRHIGGGHKQ Sbjct: 1 MAIVKCKPTSAGRRFVVKVVNQELHKGAPYAPLLEKKSKSGGRNNNGRITTRHIGGGHKQ 60 Query: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 HYR+VDFRRNKDGIPA VER+EYDPNRTAHIALL YADGER+YIIAPKGV+ GDQLISG Sbjct: 61 HYRLVDFRRNKDGIPAIVERVEYDPNRTAHIALLKYADGERRYIIAPKGVAAGDQLISGI 120 Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 APIK+GN++P+RNIPVG+T+H +E+ PGKGAQIAR+AGA+ L+AREG Y +RLRSGE Sbjct: 121 GAPIKAGNSMPLRNIPVGSTVHGIELKPGKGAQIARSAGASAQLVAREGAYVTLRLRSGE 180 Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 +R+V ECRAT+GEV N EH+LR +GKAGATRWRGVRPTVRGV MNPVDHPHGGGEG+T+ Sbjct: 181 MRKVLAECRATLGEVSNSEHSLRSLGKAGATRWRGVRPTVRGVAMNPVDHPHGGGEGRTS 240 Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRR 272 AGRHPVSPWG QTKGKKTRSNKRT +MIV RR Sbjct: 241 AGRHPVSPWGLQTKGKKTRSNKRTDNMIVRRR 272 >NMA0126 [J] COG0090 Ribosomal protein L2 NmA Neisseria meningitidis Z2491 Length = 277 Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust. Identities = 210/272 (77%), Positives = 238/272 (87%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MA+VK+KPTS GRRGMV+VV L+KG P A L+EKK+ TAGRNNNGHITTRH GGGHK Sbjct: 1 MAIVKMKPTSAGRRGMVRVVTEGLHKGAPYAPLLEKKNSTAGRNNNGHITTRHKGGGHKH 60 Query: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 HYRVVDF+RNKDGIPAKVERIEYDPNRTA IALLCYADGER+YIIAP+G+ G L+SG+ Sbjct: 61 HYRVVDFKRNKDGIPAKVERIEYDPNRTAFIALLCYADGERRYIIAPRGIQAGAVLVSGA 120 Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 EA IK GNTLPIRNIPVGTTIHC+EM PGKGAQIAR+AGA+ VL+A+EG YAQVRLRSGE Sbjct: 121 EAAIKVGNTLPIRNIPVGTTIHCIEMKPGKGAQIARSAGASAVLLAKEGAYAQVRLRSGE 180 Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 VR++++ CRATIGEVGN E +L+KIGKAGA RWRG+RPTVRGVVMNPVDHPHGGGEG+T Sbjct: 181 VRKINVNCRATIGEVGNEEQSLKKIGKAGANRWRGIRPTVRGVVMNPVDHPHGGGEGRTG 240 Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRR 272 R PVSPWG KG +TR+NKRT +MIV RR Sbjct: 241 EAREPVSPWGTPAKGYRTRNNKRTDNMIVRRR 272 >YPO0213 [J] COG0090 Ribosomal protein L2 Ype Yersinia pestis Length = 274 Score = 415 bits (1067), Expect = e-116, Method: Compositional matrix adjust. Identities = 198/275 (72%), Positives = 237/275 (86%), Gaps = 1/275 (0%) Query: 1 MALVKVKPTSPGRRGMVKVVNPDLYKGRPLASLVEKKSKTAGRNNNGHITTRHIGGGHKQ 60 MA+VK KPTSPGRR +VKVVNP+L+KG+P A L+EK SK+ GRNNNG ITTRHIGGGHKQ Sbjct: 1 MAIVKCKPTSPGRRHVVKVVNPELHKGKPYAPLLEKLSKSGGRNNNGRITTRHIGGGHKQ 60 Query: 61 HYRVVDFRRNKDGIPAKVERIEYDPNRTAHIALLCYADGERKYIIAPKGVSVGDQLISGS 120 HYR+VDF+RNKDGIPA VER+EYDPNR+A+IAL+ Y DGER+YI+APKG+ GDQ+ SG Sbjct: 61 HYRLVDFKRNKDGIPAVVERLEYDPNRSANIALVLYKDGERRYILAPKGLKAGDQIQSGV 120 Query: 121 EAPIKSGNTLPIRNIPVGTTIHCVEMLPGKGAQIARTAGAAVVLMAREGTYAQVRLRSGE 180 +A IK+GNTLP+RNIPVG+T+H VEM PGKG Q+AR+AGA V ++AR+G+Y +RLRSGE Sbjct: 121 DAAIKAGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGAYVQIVARDGSYVTLRLRSGE 180 Query: 181 VRRVHIECRATIGEVGNGEHNLRKIGKAGATRWRGVRPTVRGVVMNPVDHPHGGGEGKTA 240 +R+V +CRAT+GEVGN EH LR +GKAGA+RWRG+RPTVRG MNPVDHPHGGGEG+ Sbjct: 181 MRKVQADCRATLGEVGNAEHMLRVLGKAGASRWRGIRPTVRGTAMNPVDHPHGGGEGRN- 239 Query: 241 AGRHPVSPWGQQTKGKKTRSNKRTTSMIVSRRGKK 275 G+HPV+PWG QTKGKKTRSNKRT IV RR KK Sbjct: 240 FGKHPVTPWGVQTKGKKTRSNKRTDKFIVRRRSKK 274