BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0105.p (200 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0026 [QR] COG0500 SAM-dependent methyltransferases Rso Ralsto... 226 4e-59 NMB0939 [QR] COG0500 SAM-dependent methyltransferases Nme Neisse... 174 1e-43 NMA1135 [QR] COG0500 SAM-dependent methyltransferases NmA Neisse... 171 7e-43 PA0389 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudom... 165 6e-41 mlr3539 [QR] COG0500 SAM-dependent methyltransferases Mlo Mesorh... 147 2e-35 >RSc0026 [QR] COG0500 SAM-dependent methyltransferases Rso Ralstonia solanacearum Length = 215 Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 103/189 (54%), Positives = 136/189 (71%) Query: 10 RPDLAFIAHWVREKSQVLDLGCGDGVMLDYLQSDKGCSGYGVEIDDAQIPKCVARNVSVI 69 R D IA W+ +S VLDLGCGDG +L LQ++ YG+EIDDA + + + VI Sbjct: 25 RADFRAIARWIEPRSTVLDLGCGDGSLLRVLQNELDVLAYGIEIDDAGVLAATQKGLHVI 84 Query: 70 QQDLNGGLAMFEDNAFDTVLCLSALQMVKDVEGTLREIARVGREVTVSFPNFAYWPHRVA 129 QQ+L GGLA+FED +FD V+ LQ + + LRE+ RVGRE VSFPNF YWPHR++ Sbjct: 85 QQNLEGGLALFEDKSFDMVILSQTLQTIHNTAQVLREMLRVGRECIVSFPNFGYWPHRLS 144 Query: 130 LLRGRMPVSRSLPYQWYDTPNLRCATIRDFEALANELGLEVLECVALKDGKPVRYLPNWR 189 + RGRMPVS+SLPY+WYDTPN+R TIRDFEALA ++GL +L+ V L +G+ V + NWR Sbjct: 145 IFRGRMPVSKSLPYEWYDTPNVRVLTIRDFEALAPKVGLVILDRVVLHEGRAVHWGANWR 204 Query: 190 GSLAVFRLR 198 G++AV+R+R Sbjct: 205 GNVAVYRVR 213 >NMB0939 [QR] COG0500 SAM-dependent methyltransferases Nme Neisseria meningitidis MC58 Length = 193 Score = 174 bits (440), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 118/190 (62%), Gaps = 1/190 (0%) Query: 9 LRPDLAFIAHWVREKSQVLDLGCGDGVMLDYLQSDKGCSGYGVEIDDAQIPKCVARNVSV 68 LR DL I + E S+VLDLGCGDG +L L K CSGYG+EID + ++R V+V Sbjct: 3 LRDDLQLIYDRIPEGSRVLDLGCGDGELLAALVEHKKCSGYGIEIDTNSVIAAMSRGVNV 62 Query: 69 IQQDLNGGLAMFEDNAFDTVLCLSALQMVKDVEGTLREIARVGREVTVSFPNFAYWPHRV 128 IQ DL GL F D +FD ++ +Q +++ E LR + RV ++ VSFPNF YW +RV Sbjct: 63 IQADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLMRVAKQAIVSFPNFGYWRNRV 122 Query: 129 AL-LRGRMPVSRSLPYQWYDTPNLRCATIRDFEALANELGLEVLECVALKDGKPVRYLPN 187 + L G MPVS +PY WYDTPN+ T++DF+ L + + +LE + + V++ PN Sbjct: 123 QIALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAKNNIRILERAVMTGNRQVKHFPN 182 Query: 188 WRGSLAVFRL 197 GSLA +R+ Sbjct: 183 LLGSLAFYRV 192 >NMA1135 [QR] COG0500 SAM-dependent methyltransferases NmA Neisseria meningitidis Z2491 Length = 193 Score = 171 bits (434), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 84/190 (44%), Positives = 117/190 (61%), Gaps = 1/190 (0%) Query: 9 LRPDLAFIAHWVREKSQVLDLGCGDGVMLDYLQSDKGCSGYGVEIDDAQIPKCVARNVSV 68 LR DL I + E S+VLDLGCGDG +L K CSGYG+EID + ++R V+V Sbjct: 3 LRDDLQLIYDRIPEGSRVLDLGCGDGELLAASVEHKKCSGYGIEIDTDSVIAAMSRGVNV 62 Query: 69 IQQDLNGGLAMFEDNAFDTVLCLSALQMVKDVEGTLREIARVGREVTVSFPNFAYWPHRV 128 IQ DL GL F D +FD ++ +Q +++ E LR + RV ++ VSFPNF YW +RV Sbjct: 63 IQADLEEGLTAFNDQSFDVIVLSQTIQAMQNTEKILRCLMRVAKQAIVSFPNFGYWRNRV 122 Query: 129 AL-LRGRMPVSRSLPYQWYDTPNLRCATIRDFEALANELGLEVLECVALKDGKPVRYLPN 187 + L G MPVS +PY WYDTPN+ T++DF+ L + + VLE + + V++ PN Sbjct: 123 QIALGGHMPVSERMPYHWYDTPNIHWCTLKDFDLLCAKNNIRVLERAVMTGNRQVKHFPN 182 Query: 188 WRGSLAVFRL 197 GSLA +R+ Sbjct: 183 LLGSLAFYRV 192 >PA0389 [QR] COG0500 SAM-dependent methyltransferases Pae Pseudomonas aeruginosa Length = 206 Score = 165 bits (418), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 85/194 (43%), Positives = 119/194 (61%), Gaps = 5/194 (2%) Query: 9 LRPDLAFIAHWVREKSQVLDLGCGDGVMLDYLQSDKGCSGYGVEIDDAQIPKCVARNVSV 68 +R DL I W+ S+VLDLGCGDG +L +L+ K SGYG+EID I +C+ V+V Sbjct: 1 MRADLEIIQEWIPAGSRVLDLGCGDGELLAWLRDHKQVSGYGLEIDPDNIARCIENGVNV 60 Query: 69 IQQDLNGGLAMFEDNAFDTVLCLSALQMVKDVEGTLREIARVGREVTVSFPNFAYWPHRV 128 I+QDL+ GL F ++FD V+ ALQ V + L E+ RVG+ ++FPNF +W R Sbjct: 61 IEQDLDKGLGNFASDSFDVVVMTQALQAVHYPDKILEEMLRVGKTCIITFPNFGHWRCRW 120 Query: 129 ALLR-GRMPVSRSLPYQWYDTPNLRCATIRDFEALANELGLEVLECVAL----KDGKPVR 183 L R GRMPVS LPY WY+TPN+ T +DFE L +L + VL+ +A+ + G R Sbjct: 121 YLARNGRMPVSEFLPYTWYNTPNIHFCTFQDFERLCRQLRMRVLDRLAVDRDHRHGWASR 180 Query: 184 YLPNWRGSLAVFRL 197 PN G + ++R+ Sbjct: 181 LWPNLLGEIGIYRV 194 >mlr3539 [QR] COG0500 SAM-dependent methyltransferases Mlo Mesorhizobium loti Length = 205 Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 81/198 (40%), Positives = 117/198 (59%), Gaps = 7/198 (3%) Query: 10 RPDLAFIAHWVREKSQVLDLGCGDGVMLDYLQSDKGCSGYGVEIDDAQIPKCVARNVSVI 69 R DL +A+ + +S+VLD+G GDG +L+ LQ K G G+E+ + +CVAR +SVI Sbjct: 8 RVDLEVVANLIPPQSRVLDVGSGDGSLLELLQDTKQVDGRGLELSQRGVNECVARGLSVI 67 Query: 70 QQDLNGGLAMFEDNAFDTVLCLSALQMVKDVEGTLREIARVGREVTVSFPNFAYWPHRVA 129 Q D + L + D FD V+ LQ ++ + L E+ R+G VSFPNF +W R++ Sbjct: 68 QGDADKDLEFYPDKGFDFVVLSQTLQATRNPKLVLDELLRIGNRAIVSFPNFGHWRVRLS 127 Query: 130 L-LRGRMPVSRSLPYQWYDTPNLRCATIRDFEALANELGLEVLECVALK-DGKPVR---- 183 L ++GRMPV++ LPY WYDTPN+ TIRDF L ELG V + AL G+ + Sbjct: 128 LFVKGRMPVTQDLPYSWYDTPNIHFCTIRDFVNLCEELGATVEKATALDAAGQKIGLSMP 187 Query: 184 -YLPNWRGSLAVFRLRKK 200 + N+ G AVF L++ Sbjct: 188 WWFWNFFGQQAVFLLKRN 205