BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0077.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0841 [E] COG1126 ABC-type polar amino acid transport system, ... 320 3e-87 BH1463 [E] COG1126 ABC-type polar amino acid transport system, A... 316 3e-86 lin2353 [E] COG1126 ABC-type polar amino acid transport system, ... 316 3e-86 AF0680 [E] COG1126 ABC-type polar amino acid transport system, A... 313 3e-85 L2385 [E] COG1126 ABC-type polar amino acid transport system, AT... 309 3e-84 >lin0841 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Lin Listeria innocua Length = 242 Score = 320 bits (819), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 149/239 (62%), Positives = 191/239 (79%) Query: 2 IKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFIE 61 +KV L+K FG +L+GID E++ EVVCVIGPSGSGKSTFLRC+N LEE++ G++ ++ Sbjct: 4 LKVTGLKKSFGANEVLKGIDIEVKEGEVVCVIGPSGSGKSTFLRCMNNLEEITAGEVVVD 63 Query: 62 GVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKLL 121 + D KVD+N +R +GMVFQ FNLFPH++VLEN+ +AP+++KKM + A A +LL Sbjct: 64 DFNITDKKVDINKVRENIGMVFQHFNLFPHLSVLENITLAPVELKKMDKEAAKSNALRLL 123 Query: 122 QKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMKQ 181 ++VGL +K D FPNQLSGGQ+QRVAIARALAM+P +MLFDEPTSALDPE+VGEVL VMK+ Sbjct: 124 EQVGLKEKADEFPNQLSGGQKQRVAIARALAMDPDIMLFDEPTSALDPEMVGEVLGVMKE 183 Query: 182 LAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 LA++GMTM++VTHEMGFAREV DRV F+D G I+EEG P + P +ERT FL KVL Sbjct: 184 LAKDGMTMMIVTHEMGFAREVGDRVIFMDGGYIVEEGKPADIFDNPTNERTISFLDKVL 242 >BH1463 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Bha Bacillus halodurans Length = 240 Score = 316 bits (810), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 151/240 (62%), Positives = 190/240 (79%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 MI V L K FG +L+GI EI+ +VV VIGPSGSGKSTFLRCLN LE + G ++I Sbjct: 1 MINVKDLHKSFGSLEVLKGITTEIQKGDVVAVIGPSGSGKSTFLRCLNLLEVPTSGHVWI 60 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 + ++ PK ++ LR ++GMVFQ F+LFPHMTV+ENL APM+VK +S+ +A+ E L Sbjct: 61 DDEEITHPKTNVGKLRTKIGMVFQHFHLFPHMTVMENLTFAPMKVKGVSKAEAIAKGESL 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 LQKVGLL+K D +P++LSGGQ+QRVAIARALAM+P+VMLFDEPTSALDPE+V EVL+VMK Sbjct: 121 LQKVGLLEKRDEYPSRLSGGQKQRVAIARALAMDPEVMLFDEPTSALDPEMVKEVLAVMK 180 Query: 181 QLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 LAE GMTMV+VTHEMGFA+EV+DRV F+DQG+++E+ PP+Q P ER RDFL KVL Sbjct: 181 DLAETGMTMVIVTHEMGFAKEVADRVLFLDQGILLEDLPPKQFFAAPKSERARDFLEKVL 240 >lin2353 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Lin Listeria innocua Length = 241 Score = 316 bits (809), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 157/240 (65%), Positives = 186/240 (77%) Query: 1 MIKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFI 60 MI + L K FG+ +L+GID EI + EVV VIGPSGSGKSTFLRCLN LE+ + G I Sbjct: 1 MINIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFLRCLNLLEQPTTGTILF 60 Query: 61 EGVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKL 120 E L + ++N LR ++GMVFQ FNLFPH VLENL++APM+VK A A L Sbjct: 61 ENKDLMAKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAPMKVKNEDSTAAKEHALSL 120 Query: 121 LQKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMK 180 L+KVGL DK ++P+QLSGGQQQRVAIARALAM P VMLFDEPTSALDPE+VGEVLSVMK Sbjct: 121 LEKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLFDEPTSALDPEMVGEVLSVMK 180 Query: 181 QLAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 LA+EGMTMVVVTHEMGFAREV+DRV F+D GVI E+G P++V G P ++RT+DFL KVL Sbjct: 181 SLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQGTPEEVFGNPQNDRTKDFLGKVL 240 >AF0680 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Afu Archaeoglobus fulgidus Length = 242 Score = 313 bits (801), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 148/239 (61%), Positives = 190/239 (79%) Query: 2 IKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFIE 61 +++ L KRFG+ +L+G+ ++ EVV +IGPSGSGKST LRC+N LEE + G I ++ Sbjct: 4 LEIIDLHKRFGELEVLKGVTMKVEKGEVVVIIGPSGSGKSTLLRCINRLEEPTSGKILLD 63 Query: 62 GVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKLL 121 GV + + K+D+N +R +G+VFQ+FNLFPH+T L+N+ +AP+++KKMS+R+A + +LL Sbjct: 64 GVDITNSKIDINKVRQRIGIVFQQFNLFPHLTALQNVTLAPIKIKKMSKREAEELGMRLL 123 Query: 122 QKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMKQ 181 +KVGL DK D +P QLSGGQQQRVAIARALAM P+VMLFDE TSALDPELV EVL VMKQ Sbjct: 124 EKVGLEDKADYYPAQLSGGQQQRVAIARALAMNPEVMLFDEVTSALDPELVKEVLDVMKQ 183 Query: 182 LAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 LA +GMTMVVVTHEMGFAREV DRV F+D GVI+EEG P+Q+ P HERTR FL +L Sbjct: 184 LARDGMTMVVVTHEMGFAREVGDRVIFMDGGVIVEEGKPEQIFSNPKHERTRKFLSMIL 242 >L2385 [E] COG1126 ABC-type polar amino acid transport system, ATPase component Lla Lactococcus lactis Length = 247 Score = 309 bits (792), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 147/239 (61%), Positives = 186/239 (77%) Query: 2 IKVNQLQKRFGQAHILRGIDCEIRAREVVCVIGPSGSGKSTFLRCLNGLEEVSDGDIFIE 61 I+V L K FG+ +L+GI + +VVC+IGPSGSGKSTFLR LNGLE + GDI I+ Sbjct: 7 IEVTDLHKSFGKNEVLKGITTKFEKGDVVCIIGPSGSGKSTFLRALNGLETATSGDIIID 66 Query: 62 GVKLNDPKVDLNALRAELGMVFQRFNLFPHMTVLENLIMAPMQVKKMSRRQAVLVAEKLL 121 G L D +LN +R +GMVFQ FNLFP+MTV++N+ AP+++KKMS+ A A +LL Sbjct: 67 GFNLTDKNTNLNLVRQNVGMVFQHFNLFPNMTVMQNITYAPVELKKMSKDDADKKAIQLL 126 Query: 122 QKVGLLDKIDAFPNQLSGGQQQRVAIARALAMEPKVMLFDEPTSALDPELVGEVLSVMKQ 181 + VGLLDK DA P LSGGQ+QRVAIARALAM P VMLFDEPTSALDPE+VG+VL+VM++ Sbjct: 127 ETVGLLDKKDAMPEMLSGGQKQRVAIARALAMNPDVMLFDEPTSALDPEMVGDVLAVMQK 186 Query: 182 LAEEGMTMVVVTHEMGFAREVSDRVFFIDQGVIMEEGPPQQVLGEPVHERTRDFLRKVL 240 LAEEGMTM++VTHEMGFAR+V++RV F D GVI+E+G P+++ P H R +DFL KVL Sbjct: 187 LAEEGMTMLIVTHEMGFARKVANRVIFTDGGVILEDGTPEELFDSPKHPRLQDFLSKVL 245