BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0076.p (250 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value NMB1509 [E] COG0765 ABC-type amino acid transport system, permea... 179 4e-45 NMA1709 [E] COG0765 ABC-type amino acid transport system, permea... 179 4e-45 TM0592 [E] COG0765 ABC-type amino acid transport system, permeas... 164 2e-40 BH1462 [E] COG0765 ABC-type amino acid transport system, permeas... 157 2e-38 lin2352_2 [E] COG0765 ABC-type amino acid transport system, perm... 155 6e-38 >NMB1509 [E] COG0765 ABC-type amino acid transport system, permease component Nme Neisseria meningitidis MC58 Length = 248 Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 91/185 (49%), Positives = 125/185 (67%), Gaps = 4/185 (2%) Query: 65 WPIR----FYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFAS 120 W +R YV+ RGTPLFVQI++ + P ++PS G+++SG+ A +R YG + Sbjct: 60 WALRKVSLLYVTLFRGTPLFVQIVIWAYVWFPFFVHPSDGILVSGEAAIALRRGYGPLIA 119 Query: 121 AVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYMATLRRVVLPQAFRRMLPPLG 180 LA+ NSGAY+ EIFRAGIQSID+GQ EA+RSLG++Y +R V+LPQA RRMLPPL Sbjct: 120 GSLALIANSGAYICEIFRAGIQSIDKGQMEAARSLGLTYPQAMRYVILPQALRRMLPPLA 179 Query: 181 NNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALSALVRHL 240 + I ++KDSSL S I +AELAY T++G Y+ Y EP T+++IY ++T L + L Sbjct: 180 SEFITLLKDSSLLSVIAVAELAYVQNTITGRYSVYEEPLYTVALIYLLMTTFLGWIFLRL 239 Query: 241 EARYG 245 E RY Sbjct: 240 EKRYN 244 >NMA1709 [E] COG0765 ABC-type amino acid transport system, permease component NmA Neisseria meningitidis Z2491 Length = 248 Score = 179 bits (455), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 91/185 (49%), Positives = 125/185 (67%), Gaps = 4/185 (2%) Query: 65 WPIR----FYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFAS 120 W +R YV+ RGTPLFVQI++ + P ++PS G+++SG+ A +R YG + Sbjct: 60 WALRKVSLLYVTLFRGTPLFVQIVIWAYVWFPFFVHPSDGILVSGEAAIALRRGYGPLIA 119 Query: 121 AVLAITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYMATLRRVVLPQAFRRMLPPLG 180 LA+ NSGAY+ EIFRAGIQSID+GQ EA+RSLG++Y +R V+LPQA RRMLPPL Sbjct: 120 GSLALIANSGAYICEIFRAGIQSIDKGQMEAARSLGLTYPQAMRYVILPQALRRMLPPLA 179 Query: 181 NNAIAIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALSALVRHL 240 + I ++KDSSL S I +AELAY T++G Y+ Y EP T+++IY ++T L + L Sbjct: 180 SEFITLLKDSSLLSVIAVAELAYVQNTITGRYSVYEEPLYTVALIYLLMTTFLGWIFLRL 239 Query: 241 EARYG 245 E RY Sbjct: 240 EKRYN 244 >TM0592 [E] COG0765 ABC-type amino acid transport system, permease component Tma Thermotoga maritima Length = 216 Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 97/239 (40%), Positives = 142/239 (59%), Gaps = 29/239 (12%) Query: 6 QW-EIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLRYCVQ 64 +W +I + LPL ++G TL+ + V+ G G+ +G+GRL++ R ++ Sbjct: 3 EWLSVIVDNLPLLLKGALRTLQLTSLAVLIGLAIGIFVGMGRLSKYR----------IIR 52 Query: 65 WPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLA 124 +P YV FLRGTPL VQ+ L++F L P GL + F +AV+A Sbjct: 53 YPSSVYVEFLRGTPLMVQLFLVYFGL------PELGL------------EFDRFTAAVIA 94 Query: 125 ITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYMATLRRVVLPQAFRRMLPPLGNNAI 184 + +NSGAYV+EI RAGIQS+ +GQ EA+RSLGMS+ + V+LPQAFR +LP LGN I Sbjct: 95 LGINSGAYVAEIVRAGIQSVPKGQYEAARSLGMSHAQAMIYVILPQAFRHILPALGNEFI 154 Query: 185 AIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALSALVRHLEAR 243 A+ KDSSLA IG EL +A+ + + Y +++IY+ IT ++S LV+ +E R Sbjct: 155 ALAKDSSLAMVIGTVELMRSAQYIVSRTFMSFPIYGGVALIYFAITFSVSRLVKFVEGR 213 >BH1462 [E] COG0765 ABC-type amino acid transport system, permease component Bha Bacillus halodurans Length = 218 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 88/244 (36%), Positives = 136/244 (55%), Gaps = 28/244 (11%) Query: 5 FQWEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLRYCVQ 64 F + I ++P +EG W+TL+ + ++ G G+VL + ++++ R + Sbjct: 3 FDFSRIQPFMPFMLEGVWVTLQFVSVSLLFGLVLGIVLAIFKISKYR----------LFR 52 Query: 65 WPIRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLA 124 W FY S RGTPL +Q+L+I+ AL P G+ +S F +A LA Sbjct: 53 WFADFYTSIFRGTPLILQLLMIYLAL------PQFGVDIS------------QFQAAFLA 94 Query: 125 ITLNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYMATLRRVVLPQAFRRMLPPLGNNAI 184 LNS AYVSEI RAGIQ++D+GQ EA+ +LG+ Y + R++LPQA R +LP L N I Sbjct: 95 FGLNSAAYVSEIIRAGIQAVDKGQREAAEALGIPYRPMMLRIILPQAMRNILPALFNEFI 154 Query: 185 AIVKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALSALVRHLEARY 244 + K+S++ S IG+ +L A+ S Y EP L + +IY+V+ + L+ + R LE R Sbjct: 155 NLTKESAIVSVIGVTDLMRRAQITSAETYLYLEPLLFVGLIYYVLVMGLTVIGRLLERRL 214 Query: 245 GKGD 248 + D Sbjct: 215 KRSD 218 >lin2352_2 [E] COG0765 ABC-type amino acid transport system, permease component Lin Listeria innocua Length = 215 Score = 155 bits (393), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 141/242 (58%), Gaps = 31/242 (12%) Query: 7 WEIIGEYLPLFVEGTWMTLKAAIICVIAGTCWGLVLGVGRLAEARHGFWKYFLRYCVQWP 66 +E G Y F+ GT +T+ A I V+ G G +L + +LA+ R W ++WP Sbjct: 5 YEKYGNY---FITGTLITIALAAIGVLCGAILGSLLALMKLAKTR---W-------LRWP 51 Query: 67 IRFYVSFLRGTPLFVQILLIHFALMPMLINPSGGLILSGDLAREIRSHYGAFASAVLAIT 126 Y+ F+RGTPL +QI ++ F G I+ D++ AF S +A++ Sbjct: 52 AACYIEFVRGTPLLIQIFIVFF----------GTQIIGMDVS--------AFVSGCIALS 93 Query: 127 LNSGAYVSEIFRAGIQSIDRGQSEASRSLGMSYMATLRRVVLPQAFRRMLPPLGNNAIAI 186 LNS AYV+EI RAGI ++++GQ EA+RSLGM+ A++R ++LPQA + +LP LGN + + Sbjct: 94 LNSAAYVAEIIRAGISAVNKGQMEAARSLGMTQGASMRYIILPQAVKNILPALGNEFVTV 153 Query: 187 VKDSSLASAIGLAELAYAARTVSGAYARYWEPYLTISVIYWVITLALSALVRHLEARYGK 246 +K+SS+ S IG+ EL + V GA + + P + S+IY+V+T +LS L+ E R Sbjct: 154 IKESSIVSVIGVTELMFMTGVVQGASFKPFIPLIITSLIYFVLTFSLSRLLGVAERRMRT 213 Query: 247 GD 248 D Sbjct: 214 SD 215