BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0070.p (338 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2309 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 373 e-103 RSp1509 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 259 7e-69 CAC0106 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 57 6e-08 RSc1198 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate trans... 52 3e-06 BH1209 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transp... 49 2e-05 >PA2309 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Pae Pseudomonas aeruginosa Length = 340 Score = 373 bits (957), Expect = e-103, Method: Compositional matrix adjust. Identities = 180/338 (53%), Positives = 244/338 (72%), Gaps = 1/338 (0%) Query: 1 MPSLRKSYKSFAALLASLITLGSAANAHAEGSIRIAQQFGIGYLILDVVQDQKLIEKYGK 60 +P + + L+ TL ++ A AEG IRIA+QFGI YL+L+VV+DQ+LIEK+G+ Sbjct: 4 IPRFTRLVAALGLGLSLATTLLASRPAQAEGEIRIAEQFGIVYLLLNVVRDQRLIEKHGQ 63 Query: 61 QEGLDIKVEWTSLSGATGMNEALLAGALDVVSAGAPPALVLWDRTRGRQNVKAIASLGSM 120 EGL IKV+WT LSG +N+ALL+GA+D+ AG P L +WDRTRGRQNVKA+ASLG+ Sbjct: 64 AEGLQIKVDWTQLSGGAAVNDALLSGAIDIAGAGVGPLLTIWDRTRGRQNVKAVASLGNF 123 Query: 121 PNYLLSNNPQVKSIKDFSDKDRIAVPAAGVGFQSRTLQIETAKVYGKADFKRFDRITVSL 180 P YLLSN+P+V+SI DF DRIAVPA GV QSR LQ AK +G F R D+ TV+L Sbjct: 124 PYYLLSNDPRVRSIADFGAGDRIAVPAVGVSVQSRFLQYAAAKQWGDKQFDRLDKYTVAL 183 Query: 181 SHPDATAALIAGGSEINAHFSSPPFQYQALEHKNVHKVISSYDILGGPATFNVLYTTQKF 240 HPDATAAL+AGG+E+ HFS+PPFQ QAL + VH V+ SY++L GP + VL+ T+KF Sbjct: 184 PHPDATAALVAGGTELTGHFSNPPFQDQALANPKVHVVLDSYELL-GPNSPTVLFATEKF 242 Query: 241 HDDNPKTYRAFYQALVEAAEFVRNNKDKAADTFIRVQKSKLSPQFVRRIVEDPEINFTVS 300 DNPKTYRAF +AL EAA F +N+K AADT+IRV +K+ + +I+ +P++ F+V+ Sbjct: 243 RQDNPKTYRAFVEALKEAAAFAQNDKAAAADTYIRVTGAKIDRAALLKIIANPQVEFSVT 302 Query: 301 PERSFVYAEKLYELGILKNRASSWKDYFFEEAYAQPGS 338 P+ ++ AE LY +G ++N+ +SW+DYFF++ GS Sbjct: 303 PKNTYPLAEFLYRVGAIRNKPASWQDYFFQDGAPLQGS 340 >RSp1509 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Rso Ralstonia solanacearum Length = 346 Score = 259 bits (661), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 135/320 (42%), Positives = 196/320 (61%), Gaps = 4/320 (1%) Query: 22 GSAANAHAEGS-IRIAQQFGIGYLILDVVQDQKLIEKYGKQEGL-DIKVEWTSLSGATGM 79 G+ A AE S +RI+ +G+ YL + V+ + L+EK K GL D+KV + L G + Sbjct: 28 GAVGAARAEVSEVRISHGYGVLYLPIMVMASEHLLEKQAKAAGLGDVKVSYRVLDGGNVI 87 Query: 80 NEALLAGALDVVSAGAPPALVLWDRTRGR-QNVKAIASLGSMPNYLLSNNPQVKSIKDFS 138 N+A+L+GALD+ S G P L LWD+TRG V+ +++L + YL++ NP VK++ DFS Sbjct: 88 NDAMLSGALDIASLGVPGFLTLWDKTRGSAMEVRGLSALSASSMYLMTRNPNVKTLADFS 147 Query: 139 DKDRIAVPAAGVGFQSRTLQIETAKVYGKADFKRFDRITVSLSHPDATAALIAGGSEINA 198 DKDRIAVP + LQ+ AK +G F + D ITV L HPDATA ++AGGS+IN+ Sbjct: 148 DKDRIAVPGIKTSLPAVVLQMAAAKAFGDKQFNKLDPITVPLPHPDATAVMLAGGSQINS 207 Query: 199 HFSSPPFQYQALEHKNVHKVISSYDILGGPATFNVLYTTQKFHDDNPKTYRAFYQALVEA 258 H +SPPF Y +H+V ++ D+LG T ++ YT++KF++ NPK AF AL EA Sbjct: 208 HMASPPFSYAEAAAPGLHRVFNTVDVLGN-ITLDMTYTSKKFYEANPKLSAAFVAALDEA 266 Query: 259 AEFVRNNKDKAADTFIRVQKSKLSPQFVRRIVEDPEINFTVSPERSFVYAEKLYELGILK 318 + +K KAA +I K K SP V++I++DP+ FT +P YAE + +G +K Sbjct: 267 NALIARDKAKAAQIYIAQSKVKSSPDEVKKILDDPDSRFTTTPVGVAHYAEFMQRVGTVK 326 Query: 319 NRASSWKDYFFEEAYAQPGS 338 + +SWKD FF + GS Sbjct: 327 GKPASWKDLFFPTVQNRQGS 346 >CAC0106 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Cac Clostridium acetobutylicum Length = 368 Score = 57.0 bits (136), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 67/272 (24%), Positives = 120/272 (44%), Gaps = 13/272 (4%) Query: 63 GLDIKVEWTSLSGATGMNEALLAGALDVVSAGAPPALVLWDRTRGRQNVKAIASLGSMPN 122 G + K++W S + E+LLAG +D+ G PA+ + ++ G +++ IA Sbjct: 86 GSNTKIKWEKFSAGSAEVESLLAGEVDIGYIGPGPAINAYTKSNG--DIQVIAGAADAGA 143 Query: 123 YLLSNN-PQVKSIKDFSDKDRIAVPAAGVGFQSRTLQIETAKVYGKADFKRFDRITVSLS 181 L+S +KS+KD +K R+A+P G Q TL+I + G D + + + + Sbjct: 144 ILVSKKGADIKSVKDLKNK-RVAIPQYG-NTQDLTLRILLYE-NGLKDRAKGGNVEIVEA 200 Query: 182 HPDATAALIAGGSEINAHFSSPPFQYQALEHKNVHKVISSYDIL-GGPATFNVLYTTQKF 240 L+ GS I+A P+ + + V++ DI G ++ ++F Sbjct: 201 ENSDIKTLLGKGS-IDAALVPEPWGTRLVNEVKAKVVLNYEDIWRKGQYPTAIVVARKEF 259 Query: 241 HDDNPKTYRAFYQALVEAAEFVRNNKDKAADTFIRVQKSKLSPQFVRRIVED--PEINFT 298 +P F + LVE V +N+D + R K ++I++ I T Sbjct: 260 VKAHPDIVEKFVKNLVEETNKVNSNRDNSEKAINRQLKEITGKGLSKKILDSSFERIKVT 319 Query: 299 VSPERSFV--YAEKLYELGILKNRASSWKDYF 328 +PE+ V A ++ G +K++A KD F Sbjct: 320 NNPEKDAVLDMANWSFKAGFIKSKA-DLKDMF 350 >RSc1198 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Rso Ralstonia solanacearum Length = 349 Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 61/217 (28%), Positives = 91/217 (41%), Gaps = 24/217 (11%) Query: 58 YGKQEGLDIKVEWTSLSGATGMNEALLAGALDVVSAGAPPALVLWDRTRGRQNVKAIASL 117 Y K EGLD VE +G +A++ G+ DVVS LVL + +G Q + Sbjct: 63 YFKDEGLD--VEIVDFAGGAKALQAVVGGSADVVSGAYEHTLVL--QAKG-QTYQEFVLQ 117 Query: 118 GSMPNYLLSNN----PQVKSIKDFSDKDRIAVPAAGVGFQSRTLQIETAKVYGKADFKRF 173 G P +L+ N P KSI D K RI V A G + I V +A K Sbjct: 118 GRAPQIVLAVNNKTMPNYKSIADLKGK-RIGVTAPG-----SSTNIMVNYVLARAGIKPS 171 Query: 174 DRITVSLSHPDATAALIAGGSEINAHFSSPPFQYQALEHKNVHKVIS-------SYDILG 226 + + + A + G +I+A + P L KN ++IS + + G Sbjct: 172 EVSFIGVGPSSGAIAAVRAG-QIDALANLDPVT-SMLTRKNEVRIISDTRTLADTRAVFG 229 Query: 227 GPATFNVLYTTQKFHDDNPKTYRAFYQALVEAAEFVR 263 G LY + F NP T +A A+V A ++++ Sbjct: 230 GNMPAGCLYASTSFIQKNPNTTQALTNAMVRALKWLQ 266 >BH1209 [P] COG0715 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components Bha Bacillus halodurans Length = 336 Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 61/263 (23%), Positives = 109/263 (41%), Gaps = 30/263 (11%) Query: 67 KVEWTSLSGATGMNEALLAGALDVVSAGAPPALVLWDRTRGRQNVKAIASLGSMPN---- 122 KVE+T EAL G++D+ G PA+ + T G + LGS N Sbjct: 65 KVEFTHFPNGNDFIEALSTGSIDIGYVGPGPAINYY-LTGGD-----VVVLGSAANGATL 118 Query: 123 YLLSNNPQVKSIKDFSDKDRIAVPAAGVG------FQSRTLQIETAKVYGKADFKRFDRI 176 + + + ++ DF K P G + L +E+ +V G + + RI Sbjct: 119 IVARDGSGIDTLDDFDGK-SFCTPGNGCTHNVQLEIMLKELGLESNRVGGTVEHQS--RI 175 Query: 177 TVSLSHPDATAALIAGGSEINAHFSSPPFQYQALEHKNVHKVISSYDI-LGGPATFNVLY 235 P A+ G +I+A + P+ +E H V D+ LG V+ Sbjct: 176 A-----PSNMVAMFEQG-QIDAAAAPEPWGTYLVEELGAHVVAEWNDVFLGEELASVVVV 229 Query: 236 TTQKFHDDNPKTYRAFYQALVEAAEFVRNNKDKAADT----FIRVQKSKLSPQFVRRIVE 291 TT++F +++P+ AF +A V++ EF + + D +T + +++L + + E Sbjct: 230 TTREFLENHPEQVEAFLRAHVKSVEFAQEDVDATLETVNDALFDLTQNRLPEDVLYKAWE 289 Query: 292 DPEINFTVSPERSFVYAEKLYEL 314 + P+ +A+ YEL Sbjct: 290 RMAVTTDTYPDALQAWADASYEL 312