BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0056.p         (134 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC0010 [O] COG0443 Molecular chaperone Ccr Caulobacter vibrioides      29   2.3  
YDR283c_2 [J] COG0124 Histidyl-tRNA synthetase Sce Saccharomyces...    29   2.6  
RSc0292 [TK] COG2197 Response regulator containing a CheY-like r...    29   3.3  
BS_yojL_1 [M] COG1388 FOG Bsu Bacillus subtilis                        29   3.4  
SMa0769 [C] COG2010 Cytochrome c, mono- and diheme variants Sme ...    28   6.4  

>CC0010 [O] COG0443 Molecular chaperone Ccr Caulobacter vibrioides
          Length = 631

 Score = 29.3 bits (64), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 16/44 (36%), Positives = 23/44 (52%)

Query: 52  RANGELLVTDQYPVDKPFVSTKTRAEVRAELQQARANGELLVSD 95
           +A  EL  T QY V+ PF+S      +   ++ +RA  E LV D
Sbjct: 263 KAKKELSSTAQYEVNLPFISMNASGPLHLNIKLSRAKLEALVDD 306


>YDR283c_2 [J] COG0124 Histidyl-tRNA synthetase Sce Saccharomyces cerevisiae
          Length = 659

 Score = 29.3 bits (64), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 2/64 (3%)

Query: 71  STKTRAEVRAEL--QQARANGELLVSDQYPADKPFHSTLTRQQVQQELQQARSQGNAVSN 128
           S+  + +VR  L  Q      ++L  +  P   PF + L  Q  ++ ++  R  G   +N
Sbjct: 1   SSPWQQQVRESLFNQSYSLTNDILFDNSVPTSTPFANILRSQMTEEVVKIFRKHGGIENN 60

Query: 129 APDR 132
           AP R
Sbjct: 61  APPR 64


>RSc0292 [TK] COG2197 Response regulator containing a CheY-like receiver
           domain and an HTH DNA-binding domain Rso Ralstonia
           solanacearum
          Length = 210

 Score = 28.9 bits (63), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 90  ELLVSD-QYPADKPFHSTLTRQQVQQELQQARSQGNAV 126
           ELL+   + P D+P H TL++++ Q   + AR Q  ++
Sbjct: 131 ELLIGGLEKPTDQPLHQTLSKREFQIFCKLARGQSVSI 168


>BS_yojL_1 [M] COG1388 FOG Bsu Bacillus subtilis
          Length = 302

 Score = 28.9 bits (63), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 6  IAKNLFAGLLLSTAVGAAMAEAPYPAETQIVSTKS 40
          + K + AGL +S  VG++MA A  PAE + +  KS
Sbjct: 1  MKKKIVAGLAVSAVVGSSMAAA--PAEAKTIKVKS 33


>SMa0769 [C] COG2010 Cytochrome c, mono- and diheme variants Sme
          Sinorhizobium meliloti
          Length = 287

 Score = 27.7 bits (60), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 4/39 (10%)

Query: 19 AVGAAMAEAPYPAETQ----IVSTKSRAEVVAELQQARA 53
          A+G A+A   +P  T+    ++   SRAEV AEL +A+A
Sbjct: 44 AIGYAVAYPSWPMLTESTKGVLGYSSRAEVSAELAEAKA 82