BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0047.p (324 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 186 9e-47 slr1245 [K] COG0583 Transcriptional regulator Syn Synechocystis 176 5e-44 RSc1729 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 166 6e-41 AGpA302 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 165 1e-40 RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 165 1e-40 >SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 298 Score = 186 bits (471), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 105/286 (36%), Positives = 166/286 (58%), Gaps = 9/286 (3%) Query: 23 IQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTEDGERCY 82 ++ F R+V GS+SAA L + IS+R++ LE LG RLLQR+T + +TE G+ Y Sbjct: 7 LEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGARLLQRTTRQISLTEAGQGFY 66 Query: 83 ERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRITVEWL 142 +R +LAG +E E G +G+LR++ P +FG+ + L FM+ HP + + + Sbjct: 67 DRVLGILAGLEEAEAYASGRSSQVQGTLRISAPTSFGRMHIAPHLTGFMKDHPDLKLHIV 126 Query: 143 LHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRPSDLAT 202 L D D +++G D AI++GE++DSS+VA LA V R+ AP+ + P +LA Sbjct: 127 LTDDFTDIVAEGFDLAIRIGELSDSSLVARKLAPVRRLLCAAPSYVARHGAPTEIGELAK 186 Query: 203 FPWIAIPAFYRRDITLTHASTGEQRQVAFRPQ--LVTDSLYALRNCAIEGMGVAVGSSWV 260 I +PA + L G +++RP+ LVT+S +R I G G+A+ S+W Sbjct: 187 H--ICLPAHNNDNWKL----EGPDGSLSYRPEGPLVTNSSEIIREAVIAGAGIALRSTWD 240 Query: 261 LAEDVATGRLVQLLPEWEPA-PLPVSLLYPYARFYPARLRHFIDTM 305 + ++ GRLVQ+LP+WE + L +S +YP +F PA++R FID + Sbjct: 241 IGRELREGRLVQVLPQWEGSHKLTLSAVYPSRQFLPAKVRQFIDYL 286 >slr1245 [K] COG0583 Transcriptional regulator Syn Synechocystis Length = 302 Score = 176 bits (447), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 89/290 (30%), Positives = 164/290 (56%), Gaps = 2/290 (0%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 77 DR+ +Q+FVR +E S SAAA + TTQPTIS+++ LE+ LGVRL+ RST + +TE+ Sbjct: 2 DRLACMQSFVRAIEMNSFSAAAREQQTTQPTISKQIAALEKYLGVRLITRSTTKLNLTEE 61 Query: 78 GERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRI 137 G++ Y+ +++L E E L G ++ A G+LR+ FG+ Q++ L+ F+ +P++ Sbjct: 62 GKQYYQYCQQILETVAEAEASLEG-KEKAVGTLRLGCSVLFGEMQIVPRLSLFIARYPQV 120 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRP 197 ++ ++ D D + +G+D AI++G D ++++ + R+TV + + + P+ P Sbjct: 121 KIDLMMADYFVDMVQEGLDLAIRIGNHQDKALISERIGITRRVTVASTSYFEKSGEPKTP 180 Query: 198 SDLATFPWIAIPAFYRRDITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEGMGVAVGS 257 +L I + + H G + + T+S A+R + +G+A+ Sbjct: 181 EELTRHNCIVYTSLSTINEWHFHGKNG-VIAINVKGSFQTNSSVAVRAAVLSDLGIAIAP 239 Query: 258 SWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFIDTMKE 307 W+ +D+ G L +L +++P P P+ +Y +RFYPA++ FID ++E Sbjct: 240 IWMFGDDIYQGNLKVVLQDYQPVPFPIYAVYRRSRFYPAKVHCFIDFLRE 289 >RSc1729 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 166 bits (421), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 102/300 (34%), Positives = 166/300 (55%), Gaps = 11/300 (3%) Query: 16 LTDRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMT 75 +++ +E +Q F+R+ E S + AA L +P S +Q LE LG RLL R+T +++T Sbjct: 1 MSNPLETMQIFIRVAELASFTRAAESLGIPKPAASVAVQQLETLLGTRLLHRTTRKVQLT 60 Query: 76 EDGERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHP 135 +DG+ +ER+++LLA +E + R + Q G LRV +P ++ +I L F+ AHP Sbjct: 61 QDGQAFFERSQDLLADMEELQTMFRQSPQALRGRLRVDMPAGVARKVVIPALPAFLDAHP 120 Query: 136 RITVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPR 195 ++ +E DR D + +G DC +++G + DSS++A L ++P+M +PA + +PR Sbjct: 121 QLEIELSSTDRRVDLVREGFDCVLRIGTLGDSSLIARPLGQLPQMNCASPAYIARYGMPR 180 Query: 196 RPSDLATFPWIAIPAFYRRDITLTHASTGEQR---QVAFRPQ--LVTDSLYALRNCAIE- 249 DL + Y + + T A E R + A RP +VT S A + Sbjct: 181 SLDDLDHHRLV----HYVQTLG-TKAPGWEYRIDGRTAHRPMPGVVTVSTAESYEAACQA 235 Query: 250 GMGVAVGSSWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFIDTMKEAM 309 G+G+ VLA VA G LV++LP++ PAP+PVSL+YP R P R++ F+ + E + Sbjct: 236 GLGIIQAPVSVLAPQVARGELVEVLPQYRPAPMPVSLVYPNRRNLPVRVQVFMHWVAEQL 295 >AGpA302 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 313 Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 102/307 (33%), Positives = 158/307 (51%), Gaps = 22/307 (7%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 77 D+I I+TFVR+ EAGS + AA L + ++S+ +Q LE LG +L++R+T ++ MT + Sbjct: 2 DQILAIRTFVRVAEAGSFAKAADTLNLPRSSVSKLVQDLESHLGTKLVERTTRSVTMTTE 61 Query: 78 GERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRI 137 G +ERA +LLA D+ + + G+R +G LRV + Q LI L F +P I Sbjct: 62 GIAYHERALKLLADLDDMDGTVAGSRSAPKGKLRVDIGSVLANQILIPALPDFQHQYPDI 121 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRP 197 + + DR AD IS+GIDC I+ G + DSS+ A L E+ + +P L G LP RP Sbjct: 122 DLMLGVSDRPADLISEGIDCVIRGGALGDSSMKARKLCELDYVICASPTYLDGLQLPERP 181 Query: 198 SDLATFPWIAIPAFYRRDITLTHASTGEQRQVAFR------------PQLVTDSLYALRN 245 D+ F R ++ AS+G++ + F+ + + A N Sbjct: 182 DDIEKF----------RIVSYFSASSGKRFPLRFQRGAERSEYFPTSGGVSVNESTAHLN 231 Query: 246 CAIEGMGVAVGSSWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFIDTM 305 + G+G+ ++ +G LV+LLP+W P P+ L+YP RF RLR F + Sbjct: 232 ALLSGLGIGQSFGFLARPHFKSGALVELLPDWTPDNHPLHLVYPADRFPNPRLRAFTEWA 291 Query: 306 KEAMPAV 312 + AV Sbjct: 292 AKIFEAV 298 >RSp1110 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 315 Score = 165 bits (418), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/289 (31%), Positives = 160/289 (55%), Gaps = 5/289 (1%) Query: 18 DRIELIQTFVRIVEAGSLSAAAAQLATTQPTISRRLQTLERSLGVRLLQRSTHAMKMTED 77 DR++ +Q F R+VEA S + AA L + T++ +Q+LE LGVRLL R+T + +T D Sbjct: 2 DRLQAMQVFTRVVEASSFTKAADNLQLPRATVTNLVQSLEAHLGVRLLHRTTRRVNVTAD 61 Query: 78 GERCYERAKELLAGWDEFENELRGARQHAEGSLRVAVPHAFGQQQLIGPLAQFMRAHPRI 137 G YER +L +E E + A G+LR+ VP + G++ L+ + F A+P + Sbjct: 62 GAAYYERCVRILGDLEETEAAFSQSASGARGTLRIDVPGSIGKRLLVPRIRDFHDAYPGL 121 Query: 138 TVEWLLHDRAADFISQGIDCAIQVGEVNDSSVVAIHLAEVPRMTVVAPALLQGRPLPRRP 197 +E + DR D + +G+DCA++VGE+ DS++VA + ++ + +P L+ PR Sbjct: 122 QLEIGMSDRTVDLVQEGVDCAVRVGELQDSTLVARRIGQLSMVNCASPDYLERYGTPRSL 181 Query: 198 SDLATFPWIAIPAFYRRD---ITLTHASTGEQRQVAFRPQLVTDSLYALRNCAIEGMGVA 254 DL IA+ F R+ + G+++ R + + + CA+ G+G+ Sbjct: 182 EDLQDH--IAVNYFSPRNGRRMDWDFVIDGQKQIHKVRSLVSVNDAESAMACALHGLGLL 239 Query: 255 VGSSWVLAEDVATGRLVQLLPEWEPAPLPVSLLYPYARFYPARLRHFID 303 + + E + +G+LV++LP++ PLPVS++YP+ R ++R F+D Sbjct: 240 QTARLLAYEHLQSGQLVEVLPDYISEPLPVSVIYPHNRHLSPKVRVFVD 288