BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0043.p (534 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 399 e-110 STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Sal... 377 e-104 RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ral... 337 5e-92 YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 329 9e-90 YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yer... 329 1e-89 >RSp1363 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 543 Score = 399 bits (1024), Expect = e-110, Method: Compositional matrix adjust. Identities = 246/518 (47%), Positives = 336/518 (64%), Gaps = 8/518 (1%) Query: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNTQMKDVIHDKYPKTVVAGDIVD 60 M++S++ I VRL F L++ L++ +AA GI RL NT+M ++ ++Y ++ I + Sbjct: 1 MRISDMRIGVRLGAAFALVVALLIGIAAVGIQRLDDNNTKMGQIVSERYSLIALSNQIKN 60 Query: 61 QLNLIARSVRNILLLKKDAQIKSEYDRITGADKAVRDDLAQ----LDQLLTDADSRASLD 116 A + + LLL + K++Y A+R AQ L++LLT +A Sbjct: 61 N-GYKANGILSNLLLVTTPEQKTKY---MSDYAAIRQANAQAYGRLEKLLTTDQGKALFK 116 Query: 117 KLRSALAAYMDKRDKVLNMMQQGGKEGAIDVLIDEVRPVQSATMNAADALIKLQQDMMKT 176 + A +AY K ++ + A + ++ +Q D ++ Q M+ Sbjct: 117 EQFDARSAYGASVRKFFALVDADNVQEARALYQGDMSRLQDRYYVLVDKMVDHQAGEMEH 176 Query: 177 AGDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTST 236 E A+ ++VL L A ITR+IT P++ A+ +AE VA G+LT Sbjct: 177 DVSEAAAQGANAKIQMIVLAVLATLLAIATGAFITRTITRPINHAMHLAEAVAQGNLTHL 236 Query: 237 IDDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAA 296 ++ +DE LL ALK M + L IVSQVR TDTI ASSE+A GN+DLSSRTE+QA+ Sbjct: 237 LEVDTQDEIGRLLAALKHMIENLHGIVSQVRGGTDTITRASSEVASGNIDLSSRTEQQAS 296 Query: 297 SLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDASSKK 356 SLEETA++MEQLT+TVKQNA +A +A++LA +AS +A +GG+ V + +QTM I+ SS+K Sbjct: 297 SLEETAAAMEQLTSTVKQNADNAQEASRLASNASMVATKGGDAVDEAIQTMSTINTSSRK 356 Query: 357 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEIKSL 416 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSA AA+EIK+L Sbjct: 357 IVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKAL 416 Query: 417 IGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAIVQM 476 I DSV VS G+ VE+AG I++VV +Q V +V+EISA+ +EQS GIEQ+N AI QM Sbjct: 417 IEDSVGHVSTGTAKVEEAGQIIRDVVAGIQNVTNIVSEISASSREQSDGIEQINEAITQM 476 Query: 477 DQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKLE 514 D+ TQ+NA+LVE++A AAQ+LQDQA QLA +VS FKL Sbjct: 477 DKATQENASLVEESATAAQALQDQANQLADMVSTFKLH 514 >STM3216 [NT] COG0840 Methyl-accepting chemotaxis protein Sty Salmonella typhimurium LT2 Length = 521 Score = 377 bits (968), Expect = e-104, Method: Compositional matrix adjust. Identities = 227/526 (43%), Positives = 337/526 (64%), Gaps = 14/526 (2%) Query: 1 MQLSNVTIRVRLWLGFGLLMVLMLAMAASGIARLGQLNTQMKDVIHDKYPKTVVAGDIVD 60 M L N+ IR +L++ FGL +VLM+ +A + L + NT M+++I + YP TV A ++D Sbjct: 1 MFLHNIKIRSKLFMAFGLFIVLMVVSSALSLFSLDRANTGMQNIITNDYPTTVKANLLID 60 Query: 61 QLN--LIARSVRNILLLKKDAQI----KSEYDRITGADKAVRDDLAQLDQLLTDADSRAS 114 N +IA+ ++LL ++ + + E D I+ A+ D+L+ DA S+ Sbjct: 61 NFNDFIIAQQ---LMLLDEEGRWSQSSQKELDEISQRITALLDELSSNRH---DAASQKI 114 Query: 115 LDKLRSALAAYMDKRDKVLNMMQQGGKEGAIDVLIDEVRPVQSATMNAADALIKLQQDMM 174 + ++R A Y++ R ++L +Q ++ AI ++ VQ + LI +Q M Sbjct: 115 ITEIREARQQYLESRFRILQDIQSHNRQAAIQEMMTRTVQVQKVYKDKVQELIAVQDAQM 174 Query: 175 KTAGDEVENNYVQARTLLLVLTALGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLT 234 AG +VE ++ RTLL+ L + +AA + I RSIT PLD AVR AE +A GDLT Sbjct: 175 HNAGVQVEGDFKTNRTLLITLALISIAAGCVMGWYIVRSITRPLDEAVRFAEAIADGDLT 234 Query: 235 STIDDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQ 294 I +DET +LL+AL M RLLDIV +V+ +++I+TA+++I GN DL++RTEEQ Sbjct: 235 RHITTDYKDETGVLLQALMAMKTRLLDIVQEVQNGSESISTAAAQIVAGNQDLAARTEEQ 294 Query: 295 AASLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDASS 354 A+S+EETA+SMEQ+TATVK A H +A +L+ A+ + + GE+++QV Q M I+ ++ Sbjct: 295 ASSVEETAASMEQITATVKNTADHTSEATKLSAGAASVVKNNGEMMNQVTQKMRVINDTA 354 Query: 355 KKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEIK 414 ++ DII +ID IAFQTNILALNAAVEAARAGE GRGFAVVA EVR LAQ+SA++A EI+ Sbjct: 355 NRMSDIINIIDSIAFQTNILALNAAVEAARAGEHGRGFAVVAGEVRQLAQKSASSASEIR 414 Query: 415 SLIGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAIV 474 +LI DS ++ +G LVE+A I +V +V+ + ++ EI A +EQ+ GI Q+N AI Sbjct: 415 NLIEDSTSQTQEGMHLVEKASALINGMVDNVEEMDVILREIGQASREQTDGISQINSAIG 474 Query: 475 QMDQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKL--EGREP 518 +D TQQN+ LVE++ AAA SL +QA L LV+VF++ E +P Sbjct: 475 LIDAATQQNSCLVEESVAAAASLNEQALHLKELVNVFRVREEDTQP 520 >RSc1234 [NT] COG0840 Methyl-accepting chemotaxis protein Rso Ralstonia solanacearum Length = 514 Score = 337 bits (863), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 195/318 (61%), Positives = 248/318 (77%), Gaps = 4/318 (1%) Query: 198 LGLAAAATIALMITRSITAPLDRAVRVAETVAAGDLTSTIDDSGRDETSMLLRALKKMND 257 LGLA A + +RSIT PL RAV VA TVA GDL S + G DE + LL AL++M Sbjct: 196 LGLAGA----FLFSRSITRPLSRAVEVARTVAQGDLGSAFEARGSDEIAQLLIALREMQG 251 Query: 258 RLLDIVSQVRVSTDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNAS 317 L +VS+VR + + +A+AS++IA GNL+LSSRTEEQAASLEETA++M +LT+TV+ N+ Sbjct: 252 SLAKVVSEVRRNAEGVASASAQIASGNLNLSSRTEEQAASLEETAANMGELTSTVRLNSE 311 Query: 318 HAGQANQLAGSASDIARQGGEVVSQVVQTMGAIDASSKKIVDIIGVIDGIAFQTNILALN 377 +A QA+ LAG ASD A +GG+V++ VV+TM I SS K+ +IIGVID IAFQTNILALN Sbjct: 312 NAVQASTLAGHASDTAARGGKVMTDVVETMQGISESSAKVGEIIGVIDSIAFQTNILALN 371 Query: 378 AAVEAARAGEQGRGFAVVAAEVRALAQRSATAAQEIKSLIGDSVARVSDGSKLVEQAGLT 437 AAVEAARAGEQGRGFAVVA EVR LAQRSA+AA+EIK LIG S RV G++LV++AG Sbjct: 372 AAVEAARAGEQGRGFAVVAGEVRTLAQRSASAAKEIKGLIGQSAERVEAGARLVQEAGGI 431 Query: 438 IQEVVQSVQRVGAVVNEISAAGQEQSAGIEQVNLAIVQMDQVTQQNAALVEQAAAAAQSL 497 I E+V SVQRV +V+EIS+A EQS GIEQVN+A+ Q+++VTQQNAALVE+A+AAAQ + Sbjct: 432 IDEIVASVQRVTQIVSEISSASAEQSTGIEQVNIAVGQIEEVTQQNAALVEEASAAAQQM 491 Query: 498 QDQAAQLARLVSVFKLEG 515 DQA L R V++F+++G Sbjct: 492 ADQADALRRAVAIFRVDG 509 >YPO4062 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 649 Score = 329 bits (844), Expect = 9e-90, Method: Compositional matrix adjust. Identities = 183/318 (57%), Positives = 238/318 (74%), Gaps = 3/318 (0%) Query: 210 ITRSITAPLDRAVRVAETVAAGDLTSTIDDSGRDETSMLLRALKKMNDRLLDIVSQVRVS 269 +TR IT PL + +AE +A GDLT+ S DE ML+ A+ +MN+ L ++ ++R+ Sbjct: 308 MTRQITVPLRATLDMAERIATGDLTAATTSSRTDELGMLMNAVARMNENLRAMIDEIRIG 367 Query: 270 TDTIATASSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQANQLAGSA 329 ++ AS EIA GN DLSSRTE+QAA++EETA+SMEQL ATVKQN +A ANQLA A Sbjct: 368 VSQVSHASGEIAAGNTDLSSRTEQQAAAVEETAASMEQLNATVKQNTDNAHHANQLATEA 427 Query: 330 SDIARQGGEVVSQVVQTMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQG 389 S A+QGG++V+ VV+TM I SSK+I +I VI+ IAFQTNILALNAAVEAARAGEQG Sbjct: 428 SQTAQQGGKLVNDVVRTMNDISGSSKRISEITSVINSIAFQTNILALNAAVEAARAGEQG 487 Query: 390 RGFAVVAAEVRALAQRSATAAQEIKSLIGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVG 449 RGFAVVA+EVR LAQRSA AA+EI+ LIG+SV++V+ G+ LV+ AG T++E+V+SV V Sbjct: 488 RGFAVVASEVRNLAQRSAQAAKEIEGLIGESVSQVNAGTSLVKNAGNTMEEIVRSVSHVR 547 Query: 450 AVVNEISAAGQEQSAGIEQVNLAIVQMDQVTQQNAALVEQAAAAAQSLQDQAAQLARLVS 509 ++ EI++A EQS GI QV+LAI +MD TQQNAALVE++AAAA SL +QA LA+ V+ Sbjct: 548 DIMAEIASASDEQSRGITQVSLAISEMDSTTQQNAALVEESAAAADSLAEQAILLAQAVA 607 Query: 510 VFKL---EGREPELAVIT 524 VF+L EG E V+T Sbjct: 608 VFRLSEDEGATDEGRVVT 625 >YPO1675 [NT] COG0840 Methyl-accepting chemotaxis protein Ype Yersinia pestis Length = 557 Score = 329 bits (843), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 183/297 (61%), Positives = 228/297 (76%) Query: 217 PLDRAVRVAETVAAGDLTSTIDDSGRDETSMLLRALKKMNDRLLDIVSQVRVSTDTIATA 276 PL+ + + +A GDLT I+ GR+E L +LK M L+ IV +VRV D I + Sbjct: 221 PLNHLIAHIKHIANGDLTQNIEVHGRNEVGTLAASLKHMQSELVTIVGEVRVGADAIYSG 280 Query: 277 SSEIARGNLDLSSRTEEQAASLEETASSMEQLTATVKQNASHAGQANQLAGSASDIARQG 336 +SEIA GN DLS+RTE+QAASLEETA+SMEQLTATVKQNA +A QA+QLA SAS+ A++G Sbjct: 281 ASEIAVGNNDLSARTEQQAASLEETAASMEQLTATVKQNAENARQASQLALSASETAQKG 340 Query: 337 GEVVSQVVQTMGAIDASSKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 396 G+VV+ VVQTM I SS+KI DI VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA Sbjct: 341 GKVVADVVQTMHEIAGSSQKIADITSVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA 400 Query: 397 AEVRALAQRSATAAQEIKSLIGDSVARVSDGSKLVEQAGLTIQEVVQSVQRVGAVVNEIS 456 EVR LAQRSA AA+EIK LI DSV RV GS LVE AG T+ ++V +V RV ++ EI+ Sbjct: 401 GEVRNLAQRSAQAAKEIKGLIDDSVNRVDLGSVLVESAGETMGDIVNAVTRVTDIMGEIA 460 Query: 457 AAGQEQSAGIEQVNLAIVQMDQVTQQNAALVEQAAAAAQSLQDQAAQLARLVSVFKL 513 +A EQS GI+Q+ A+ +MD+VTQQNA+LVE++A+AA SL++QA+ L + +SVF L Sbjct: 461 SASDEQSRGIDQIGQAVAEMDRVTQQNASLVEESASAAASLEEQASMLTQAMSVFVL 517