BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0042.p         (88 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0961 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...   112   1e-25
RSp0204 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...   112   3e-25
RSp0515 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...   111   5e-25
RSc3217 [S] COG4104 Uncharacterized conserved protein Rso Ralsto...    80   1e-15
YPO0866 [S] COG4104 Uncharacterized conserved protein Ype Yersin...    70   1e-12

>RSc0961 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/88 (56%), Positives = 64/88 (72%)

Query: 1  MPHIIRLGDATSHGGKVTSVSATHFKVGGLPVARVGDACSCPQKGHDNCTIVEGHPHHRI 60
          M  IIRLGD+T HGGKV   +A  FKV G+PVAR GD CSCP++GH +C I+EG  H ++
Sbjct: 1  MRQIIRLGDSTDHGGKVIQTAARQFKVDGVPVARKGDRCSCPREGHQDCVIIEGDEHFKV 60

Query: 61 GGIAVAYEGHKTSCGATLVASTRHFSAS 88
           G+ VA+EGHKTSCGA L+A+   F  +
Sbjct: 61 DGVPVAFEGHKTSCGAMLIATVATFGTT 88


>RSp0204 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score =  112 bits (279), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 50/85 (58%), Positives = 62/85 (72%)

Query: 1  MPHIIRLGDATSHGGKVTSVSATHFKVGGLPVARVGDACSCPQKGHDNCTIVEGHPHHRI 60
          MP +IRLGD T HGG V   SA +FKV G+ VAR GD CSCP+KGH +C I+EG  H ++
Sbjct: 1  MPRVIRLGDPTEHGGAVVQTSAPNFKVNGVAVARKGDRCSCPRKGHQDCVIIEGDEHFKV 60

Query: 61 GGIAVAYEGHKTSCGATLVASTRHF 85
           G+ +A+EGHKTSCGATL A+   F
Sbjct: 61 DGVPIAFEGHKTSCGATLTATVASF 85


>RSp0515 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 88

 Score =  111 bits (277), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 49/85 (57%), Positives = 62/85 (72%)

Query: 1  MPHIIRLGDATSHGGKVTSVSATHFKVGGLPVARVGDACSCPQKGHDNCTIVEGHPHHRI 60
          MP IIRLGD T HGG V   SA +FKV G+ VAR GD CSCP++GH +C I+EG  H ++
Sbjct: 1  MPRIIRLGDPTDHGGAVVQTSAPNFKVNGIAVARKGDRCSCPREGHQDCVIIEGDEHFKV 60

Query: 61 GGIAVAYEGHKTSCGATLVASTRHF 85
           G+ VA+EGH+TSCGA L+A+   F
Sbjct: 61 DGVPVAFEGHRTSCGAVLIATADRF 85


>RSc3217 [S] COG4104 Uncharacterized conserved protein Rso Ralstonia
          solanacearum
          Length = 90

 Score = 80.1 bits (196), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 43/81 (53%), Positives = 53/81 (65%), Gaps = 1/81 (1%)

Query: 1  MPHIIRLGDATSHGGKVTSVSATHFKVGGLPVARVGDACSCPQKGHDNCTIVEGHPHHRI 60
          M  IIR+GDATSHGG+V S  A    V G  VAR GD CSCP +GH +CTI EG     +
Sbjct: 4  MRGIIRVGDATSHGGRVES-GAPASTVMGRAVARKGDRCSCPVQGHQDCTIAEGDAAFIV 62

Query: 61 GGIAVAYEGHKTSCGATLVAS 81
           G   A++GH T+CGA L++S
Sbjct: 63 AGQPAAFDGHTTTCGAVLISS 83


>YPO0866 [S] COG4104 Uncharacterized conserved protein Ype Yersinia pestis
          Length = 101

 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 51/83 (61%), Gaps = 3/83 (3%)

Query: 1  MPHIIRLGDATSHGGKVTSVSATHFKVGGLPVARVGDACSCPQKGHDNCTIVEGHPHHRI 60
          M  +I +GD T+HGG+V S S    K  G+ VAR+ D  SCPQ  H N  I+E HP  + 
Sbjct: 14 MKGVICIGDKTTHGGQVLSGSG-KMKFAGIGVARLNDPVSCPQ--HGNTFIIEAHPSFKD 70

Query: 61 GGIAVAYEGHKTSCGATLVASTR 83
           GI VA+ GH+  CG TL++S +
Sbjct: 71 NGIPVAFHGHRCGCGCTLISSQK 93