BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0036.p         (60 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc02184 [K] COG1396 Predicted transcriptional regulators Sme Si...    47   1e-05
FN2076 [K] COG1396 Predicted transcriptional regulators Fnu Fuso...    46   3e-05
Z5888 [K] COG1396 Predicted transcriptional regulators EcZ Esche...    45   4e-05
ECs5252 [K] COG1396 Predicted transcriptional regulators Ecs Esc...    45   4e-05
NMB1204 [K] COG1396 Predicted transcriptional regulators Nme Nei...    43   2e-04

>SMc02184 [K] COG1396 Predicted transcriptional regulators Sme
          Sinorhizobium meliloti
          Length = 89

 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/47 (48%), Positives = 31/47 (65%)

Query: 1  MSQEELAFRADISRTYLSEVERGERNISVDNMEALAIALEMELPDLM 47
          +SQE LAF A I R Y+  VERG  N+++  +EALA ALE+ +  L 
Sbjct: 20 LSQERLAFEARIDRAYVGRVERGMENVTISTIEALARALEVPVAALF 66


>FN2076 [K] COG1396 Predicted transcriptional regulators Fnu
          Fusobacterium nucleatum
          Length = 76

 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 20/48 (41%), Positives = 33/48 (68%)

Query: 1  MSQEELAFRADISRTYLSEVERGERNISVDNMEALAIALEMELPDLMR 48
          +SQE+ A    + RTYLS VE G+RNIS++N+E ++  L + + +L +
Sbjct: 19 ISQEKFALEIGMDRTYLSSVEAGKRNISLENIEKISKGLGISISELFK 66


>Z5888 [K] COG1396 Predicted transcriptional regulators EcZ Escherichia
          coli O157:H7 EDL933
          Length = 154

 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 1  MSQEELAFRADISRTYLSEVERGERNISVDNMEALAIALEMELPDLMRISLLSLPSEDS 59
          MSQE  A R   +R+Y+S +ERG  N S+D +E LA AL +E   L    L+S  SEDS
Sbjct: 22 MSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWRL----LVSDSSEDS 76


>ECs5252 [K] COG1396 Predicted transcriptional regulators Ecs Escherichia
          coli O157:H7
          Length = 154

 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 4/59 (6%)

Query: 1  MSQEELAFRADISRTYLSEVERGERNISVDNMEALAIALEMELPDLMRISLLSLPSEDS 59
          MSQE  A R   +R+Y+S +ERG  N S+D +E LA AL +E   L    L+S  SEDS
Sbjct: 22 MSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANALSVEPWRL----LVSDSSEDS 76


>NMB1204 [K] COG1396 Predicted transcriptional regulators Nme Neisseria
          meningitidis MC58
          Length = 106

 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 40/65 (61%), Gaps = 6/65 (9%)

Query: 1  MSQEELAFRADISRTYLSEVERGERNISVDNMEALAIAL-----EMELPDLMRISLLSLP 55
           SQEELA +  + RTY+S VER   NI++ N+E +A AL     ++ LP   R+ L++  
Sbjct: 35 WSQEELARQCGLDRTYVSAVERKRWNIALSNIEKMAAALGVAAYQLLLPPQERLKLMT-N 93

Query: 56 SEDSR 60
          S D+R
Sbjct: 94 SADTR 98