BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0034.p (223 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp0489 [TK] COG0745 Response regulators consisting of a CheY-li... 317 1e-86 RSp0655 [TK] COG0745 Response regulators consisting of a CheY-li... 289 3e-78 PA4885 [TK] COG0745 Response regulators consisting of a CheY-lik... 279 3e-75 PA2809 [TK] COG0745 Response regulators consisting of a CheY-lik... 278 9e-75 ylcA [TK] COG0745 Response regulators consisting of a CheY-like ... 270 2e-72 >RSp0489 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 224 Score = 317 bits (812), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 151/221 (68%), Positives = 189/221 (85%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDEPK+GDYL +GLTE+GFV D ++G DGL+ A DY LI+LDVMLPGM+GW Sbjct: 1 MRLLIVEDEPKAGDYLLKGLTESGFVADLARSGPDGLYQAMEHDYDLIVLDVMLPGMDGW 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGPS 120 ++RELRR TPVLFLTARDE+ DR+KGLELGADDYLVKPFAF EL+ARV T+LRRGP Sbjct: 61 QVIRELRRRKTTPVLFLTARDELSDRLKGLELGADDYLVKPFAFAELVARVHTILRRGPM 120 Query: 121 READVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180 RE++V+E D+ +D ++R+V+RAG+RIDLTAKE+ALLH+L RR GEVLSR I+SQVWD+ Sbjct: 121 RESEVLEIADLTIDTIKRRVTRAGRRIDLTAKEYALLHLLARRTGEVLSRSLISSQVWDV 180 Query: 181 NFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFEV 221 NFDS+TNVVDVA+RRLRAK+D+ F+ KL+HT+ GMGYV + Sbjct: 181 NFDSNTNVVDVAIRRLRAKVDDPFEHKLIHTLRGMGYVLDT 221 >RSp0655 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 228 Score = 289 bits (740), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 150/222 (67%), Positives = 178/222 (80%), Gaps = 2/222 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL++GLTEAGFVVD + GVDGLH A DY L++LDVMLP ++GW Sbjct: 1 MKLLVVEDEAKTGEYLQQGLTEAGFVVDLARNGVDGLHLATMGDYDLLVLDVMLPDLDGW 60 Query: 61 DILRELRRTHDT-PVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGP 119 +++ LR PVLFLTARD V DRVKGLELGADDYLVKPFAF ELLARVRTLLRRG Sbjct: 61 QVVQSLRAAACAVPVLFLTARDSVGDRVKGLELGADDYLVKPFAFAELLARVRTLLRRGS 120 Query: 120 SREA-DVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 + A D I+ D+V+D+ RR+ SR+GQRI LT+KEFALL +L RR GEVL R IASQVW Sbjct: 121 TPVALDRIQIADLVLDLARRRASRSGQRIALTSKEFALLELLARRRGEVLPRSLIASQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFE 220 DMNFDSDTNV+DVA+RRLRAK+D+ F KL+ TV GMGYV E Sbjct: 181 DMNFDSDTNVIDVAIRRLRAKIDDDFTPKLIQTVRGMGYVLE 222 >PA4885 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 229 Score = 279 bits (714), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 183/222 (82%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M IL++ED+ K+G+YL++GL E+G+ VDW Q G DGL+ A Y L++LDVMLPG++GW Sbjct: 1 MRILVIEDDTKTGEYLKKGLGESGYAVDWSQHGADGLYLALENRYDLVVLDVMLPGLDGW 60 Query: 61 DILRELRRTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGPS 120 I+ LR+ HD PVLFLTARD+++DR++GLELGADDYLVKPF+FTELL R+RTLLRRG Sbjct: 61 QIMEVLRKKHDVPVLFLTARDQLQDRIRGLELGADDYLVKPFSFTELLLRIRTLLRRGVV 120 Query: 121 READVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVWDM 180 REA+ ++ D+ +DV+RRKVSR GQ I LT KEFALLH+L+RR GEVLSR IAS+VWDM Sbjct: 121 REAEQVQLADLQLDVLRRKVSRQGQVIALTNKEFALLHLLMRREGEVLSRTLIASEVWDM 180 Query: 181 NFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFEVR 222 NFDSDTNVVDVA++RLRAK+D F KL+HTV G+GYV E R Sbjct: 181 NFDSDTNVVDVAIKRLRAKVDNPFPNKLIHTVRGIGYVCEER 222 >PA2809 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 226 Score = 278 bits (710), Expect = 9e-75, Method: Compositional matrix adjust. Identities = 145/224 (64%), Positives = 175/224 (78%), Gaps = 2/224 (0%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDEP+ G YLR+GL EAGF VD G +G A DY L+ILDVMLPG +GW Sbjct: 1 MKLLIVEDEPRIGQYLRQGLAEAGFAVDLSDDGNEGEQLALGGDYDLLILDVMLPGRDGW 60 Query: 61 DILRELRRTHDT-PVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGP 119 ILR +R T PVLFLTARD VEDRV+GLE GADDYLVKPFAF ELLARVRTLLRRG Sbjct: 61 QILRSVRDAGMTVPVLFLTARDAVEDRVRGLEQGADDYLVKPFAFVELLARVRTLLRRGS 120 Query: 120 SR-EADVIEYDDVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIASQVW 178 + + ++ D+ +D++RR+V R G+RIDLTAKEFALL +L+RR GEVL + IASQVW Sbjct: 121 QQLQETTLQLADLELDLLRRRVQRQGKRIDLTAKEFALLELLLRRSGEVLPKSLIASQVW 180 Query: 179 DMNFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFEVR 222 DMNFDSDTNV++VA+RRLRAK+D+ + Q+L+HTV GMGYV E R Sbjct: 181 DMNFDSDTNVIEVAIRRLRAKVDDDYPQRLIHTVRGMGYVLEER 224 >ylcA [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 227 Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/226 (62%), Positives = 170/226 (75%), Gaps = 8/226 (3%) Query: 1 MHILLVEDEPKSGDYLRRGLTEAGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 M +L+VEDE K+G+YL +GLTEAGFVVD G++G H A T DY LIILD+MLP +NGW Sbjct: 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLAMTGDYDLIILDIMLPDVNGW 60 Query: 61 DILRELRRTHD-TPVLFLTARDEVEDRVKGLELGADDYLVKPFAFTELLARVRTLLRRGP 119 DI+R LR + P+L LTA +E RVKGLELGADDYLVKPFAF ELLARVRTLLRRG Sbjct: 61 DIVRMLRSANKGMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLRRGA 120 Query: 120 SREADVIEYD----DVVVDVVRRKVSRAGQRIDLTAKEFALLHMLIRRPGEVLSRPQIAS 175 A +IE D++VD+V RKV+R+G RI LT+KEF LL +R GEVL R IAS Sbjct: 121 ---AVIIESQFQVADLMVDLVSRKVTRSGTRITLTSKEFTLLEFFLRHQGEVLPRSLIAS 177 Query: 176 QVWDMNFDSDTNVVDVAVRRLRAKLDEGFDQKLLHTVWGMGYVFEV 221 QVWDMNFDSDTN +DVAV+RLR K+D F+ KL+ TV G+GY+ EV Sbjct: 178 QVWDMNFDSDTNAIDVAVKRLRGKIDNDFEPKLIQTVRGVGYMLEV 223