BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0027.p         (273 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HI0301 [P] COG4535 Putative Mg2+ and Co2+ transporter CorC Hin H...    35   0.18 
MA0917 [L] COG1107 Archaea-specific RecJ-like exonuclease, conta...    35   0.20 
CAC0510 [M] COG0812 UDP-N-acetylmuramate dehydrogenase Cac Clost...    33   0.78 
AGc3012_2 [E] COG0404 Glycine cleavage system T protein (aminome...    30   5.2  
MA0975 [C] COG3259 Coenzyme F420-reducing hydrogenase, alpha sub...    30   5.4  

>HI0301 [P] COG4535 Putative Mg2+ and Co2+ transporter CorC Hin Haemophilus
           influenzae
          Length = 299

 Score = 35.0 bits (79), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 208 LDNTEV-LVGCPPVETIGYLPRRERESFMNSLEFLETEARARSVTFKRFSSPHEAAQHLA 266
            D+ EV  +G   ++T GYLP+R  E  + +L+F  T A +R +   R + P E   HLA
Sbjct: 233 FDDEEVDTIGGLIMQTFGYLPKRGEEIILKNLQFKVTSADSRRLIQLRVTVPDE---HLA 289


>MA0917 [L] COG1107 Archaea-specific RecJ-like exonuclease, contains
           DnaJ-type Zn finger domain Mac Methanosarcina
           acetivorans str.C2A
          Length = 714

 Score = 35.0 bits (79), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 15/172 (8%)

Query: 32  PAVLSGLFG-TAG---KGVASMVGVTVIDLQKQLDQGVAVEDLS-MPFGGFEIHSPRDGV 86
           PA + G FG TAG     +A M+   + D  K L    AV D S  P  G  I    D  
Sbjct: 468 PAHVGGDFGVTAGMLCAEIARMINPGISDTIKHLPAVSAVGDRSEAPEAGRYISLVSDRY 527

Query: 87  ARDINEVFDMAVKLSAAFGQSNFGTREEVEGETKRAFDDWAEQIRADLLSM----QTALI 142
              + E+ DMA+ L        F + +   G      D    ++  +L+S+       +I
Sbjct: 528 T--LGELKDMALALDYEQFWLKFSSGK---GLIDDILDLGDHKVHKNLVSLLCEQANTMI 582

Query: 143 TQMLQPEEFNVRI-KLSNKAVRIGFLRQHYAANFGVMRPGHTSGDTRSLKVK 193
            + L+   FNV+  KL+N A+      ++YA  F    PG TSG+   +  K
Sbjct: 583 KEQLETCLFNVKSQKLANGAIMNVIDVENYAQKFTFPPPGKTSGEMHDVLCK 634


>CAC0510 [M] COG0812 UDP-N-acetylmuramate dehydrogenase Cac Clostridium
           acetobutylicum
          Length = 305

 Score = 33.1 bits (74), Expect = 0.78,   Method: Compositional matrix adjust.
 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 12/82 (14%)

Query: 163 RIGFLRQHYAANFGVMRPGHT----SGDTRSLKVKVFDLEAVRRDQIHPLDNTEVLVGCP 218
           RI  L + Y  N+ ++  G       G  R + +K+  L  ++      + N +++ GC 
Sbjct: 52  RIIELCEKYDVNYYIIGNGSNLLVRDGGLRGVAIKLLKLNKLQ------IGNNKIIAGCG 105

Query: 219 PVETIGYLPRRERESFMNSLEF 240
               +GYL R+ R+  +  LEF
Sbjct: 106 V--PLGYLSRKARDKSLTGLEF 125


>AGc3012_2 [E] COG0404 Glycine cleavage system T protein
           (aminomethyltransferase) Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 449

 Score = 30.0 bits (66), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 5/75 (6%)

Query: 76  GFEIHSPRDGVARDINEVFDMAVKLSAAFGQSNFGTREEVEGETKRAFDDWAEQIRADLL 135
           G+E+H P +      N +FD  ++  A FG   FG R  V    ++++ +   ++  +  
Sbjct: 273 GWELHHPIEMQ----NYIFDRLMEAGAEFGIKPFGIRAMVSMSLEKSYRNMGRELSVEYN 328

Query: 136 SMQTALITQMLQPEE 150
           + ++ L  + L+PE+
Sbjct: 329 AYESGL-DRFLRPEK 342


>MA0975 [C] COG3259 Coenzyme F420-reducing hydrogenase, alpha subunit Mac
           Methanosarcina acetivorans str.C2A
          Length = 456

 Score = 30.0 bits (66), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 241 LETEARARSVTFKRFSSPHEAAQHLARQV 269
           +E   RAR  TFK F+     AQH+ARQ+
Sbjct: 309 VEVGPRARLATFKNFTEKGTFAQHIARQL 337