BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4686.p
         (255 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980966|ref|YP_001351840.1| glutamine amidotransferase, cla...   418   e-118

>gi|152980966|ref|YP_001351840.1| glutamine amidotransferase, class
           II [Janthinobacterium sp. Marseille]
          Length = 255

 Score =  418 bits (1074), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 191/255 (74%), Positives = 221/255 (86%)

Query: 1   MCQLLGMNCNTPTDIVFSFTGFATRGGLTDHHRDGWGIAFFEGSGVRTFVDHQAAVDSPV 60
           MCQLLGMNCN PTDIVFSFTGFATRGG TD H DGWGIAFFEG+GVR FVDHQAA++SPV
Sbjct: 1   MCQLLGMNCNVPTDIVFSFTGFATRGGRTDVHNDGWGIAFFEGAGVRHFVDHQAAIESPV 60

Query: 61  AALIKRYPIKSQHVIAHIRKATQGRVTLANCHPFVRELWGRYWVFAHNGDLKNFTPTLDG 120
           A LI+R+PIKS++VIAHIRKATQGRV L NCHPFVRELWGRY+VFAHNGDLK+F P L+G
Sbjct: 61  ADLIRRFPIKSKNVIAHIRKATQGRVALENCHPFVRELWGRYFVFAHNGDLKDFNPELNG 120

Query: 121 PFRPVGTTDSELSFCYILQELRRRFGDTLPLLAELRAALREIVDGIASHGTFNMLLSDGS 180
           P++PVGTTDSE +FCYILQELRRRF D LP+L +L AA+ ++   I+ HGTFNM+LSDGS
Sbjct: 121 PYQPVGTTDSEAAFCYILQELRRRFDDALPMLPQLTAAIADLTKEISQHGTFNMMLSDGS 180

Query: 181 ALFTHCSTNLYYIVRQHPFTTAKLSDEDLSVDFSEVTTSNDRVAVIVTQPLTDNEVWTQY 240
           ALF HCSTNL+YIVRQHPF  A L DED+ V+FSEVTT NDRVA+IVT+PLT NE WT +
Sbjct: 181 ALFAHCSTNLHYIVRQHPFAEATLCDEDVKVNFSEVTTPNDRVAIIVTEPLTTNETWTAF 240

Query: 241 QPGEMKLFVDGTVVD 255
             GE+K+F+DG  +D
Sbjct: 241 NSGELKVFIDGAPLD 255


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.324    0.138    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 602,148
Number of extensions: 23391
Number of successful extensions: 35
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 35
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 174
Effective length of database: 921,564
Effective search space: 160352136
Effective search space used: 160352136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)