BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4684.p (319 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982346|ref|YP_001355337.1| LysR family transcriptional reg... 507 e-145 gi|152982855|ref|YP_001355260.1| LysR family transcriptional reg... 171 6e-44 gi|152982787|ref|YP_001352203.1| LysR family transcriptional reg... 104 9e-24 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 70 2e-13 gi|152980792|ref|YP_001354199.1| LysR family transcriptional reg... 66 3e-12 >gi|152982346|ref|YP_001355337.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 319 Score = 507 bits (1305), Expect = e-145, Method: Compositional matrix adjust. Identities = 241/319 (75%), Positives = 274/319 (85%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTL D+LVIRTAHGV Sbjct: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLGDELVIRTAHGV 60 Query: 61 KPTPRAEELWPTVRRALSELEAVIAPDSFDISRAQNTFRMAMVDATAALWLPSLVRTIMR 120 KPT RAEELWP VRRALS+LEA + PD+FD+SRA TFRMAM DATAALWLP LVR I + Sbjct: 61 KPTSRAEELWPVVRRALSDLEAAVTPDTFDVSRANTTFRMAMADATAALWLPFLVRAIEK 120 Query: 121 DAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKTQISHARLYTGQ 180 DAP + +RM+PLTTR+PR MLLRGDIDLA+GFFPGV AQLA GQ A +QI H RLYTG+ Sbjct: 121 DAPGLNVRMVPLTTREPRPMLLRGDIDLAIGFFPGVAAQLASGQNTAVSQIRHERLYTGE 180 Query: 181 YVCVMHKNHPLAGQPLTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 YVCVM KNHPLA LTLD+YC A HLLVS SG+ ++D+ L + RER+ILLTVNQFF Sbjct: 181 YVCVMRKNHPLAKVELTLDNYCAAHHLLVSFSGRAKGLMDEALTNLGRERRILLTVNQFF 240 Query: 241 TAGRIVASSELITVLPRHLVAATGMAESLVVKELPFQTPEEHVDMLWHERDARNPAHKWL 300 TAGR+VASS+LITVLPRHL+A+TGMAE+L+ K+LPF+ P+ HVDMLWHERDARNPAHKWL Sbjct: 241 TAGRVVASSDLITVLPRHLIASTGMAEALIAKDLPFELPDVHVDMLWHERDARNPAHKWL 300 Query: 301 RAHLSATTHDEFGRINMKR 319 R LSA+T + GR+ +R Sbjct: 301 REQLSASTEEGIGRVKKRR 319 >gi|152982855|ref|YP_001355260.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 171 bits (433), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 101/304 (33%), Positives = 157/304 (51%), Gaps = 14/304 (4%) Query: 1 MSFLTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGV 60 M+ ++DLNLL FDA++ E+N+T AA L ++QPA+SNAL RLR ND L +RT+ G+ Sbjct: 1 MNIASVDLNLLVAFDAIVKERNVTSAAVRLGVSQPAMSNALARLRIIFNDPLFVRTSQGM 60 Query: 61 KPTPRAEELWPTVRRALSELEAVIAPDS-FDISRAQNTFRMAMVDATAALWLPSLVRTIM 119 +PTP AE+L V RA + + + +S FD + TF M + L LP L++ I Sbjct: 61 QPTPYAEQLIEPVSRACELITSALQINSVFDPATTTKTFSFYMTEIGEILLLPKLLKHIQ 120 Query: 120 RDAPRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKTQISHARLYTG 179 AP +R+ + + + + G+IDLAVG FP + K RLYT Sbjct: 121 VAAPNACVRVRRIPEQGAKEAMANGEIDLAVGLFPYL-----------KAGFYQQRLYTD 169 Query: 180 QYVCVMHKNHPLAGQPLTLDSYCNADHLLVSLSGKPH-AVIDDVLAGMNRERKILLTVNQ 238 ++ C++ + HP LT Y + H++V + H A I+ +L + RKI++T Sbjct: 170 KFACIVRQGHPTVHDSLTPQQYVDTPHVIVMSANTGHDAAIEKILLTEHLRRKIVMTSQN 229 Query: 239 FFTAGRIVASSELITVLP-RHLVAATGMAESLVVKELPFQTPEEHVDMLWHERDARNPAH 297 F I+ ++ I +P R + + + E P P + WHER +PA+ Sbjct: 230 FLVLPMIIEQTDAIATIPFRMAQKIASYSTGIKILESPIPFPNVDIKQHWHERFHYDPAN 289 Query: 298 KWLR 301 KW+R Sbjct: 290 KWMR 293 >gi|152982787|ref|YP_001352203.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 104 bits (259), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 82/309 (26%), Positives = 144/309 (46%), Gaps = 20/309 (6%) Query: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPR 65 LD++L+R+ ++ E+N++R A L QP++S +LR+LR+ D L++R A G+ PT Sbjct: 8 LDIHLIRILYLLLCEKNVSRVALKLNRPQPSISASLRKLRELTGDPLLVRGARGMVPTQH 67 Query: 66 AEELWPTVRRALSELEAVIAPDSFDISRAQ-NTFRMAMVDATAALWLPSLVRTIMRDAPR 124 E L + +R L E E + P + + + + TF +A D + ++ + R++P+ Sbjct: 68 GESLMKSAKRILDEAEHLFIPKTAFVPQDEARTFHIAAPDYMNTQFFTEVIARLRRESPK 127 Query: 125 IKIRMMPL-TTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKTQISHARLYTGQYVC 183 I + L D +L G++DL + A+ M + + ++L+ VC Sbjct: 128 SHIVIHALGPDTDYVRLLSDGELDLVI----------ANWDEMPE-HLHMSKLFDDPIVC 176 Query: 184 VMHKNHPLAGQ----PLTLDSYCNADHLLVS--LSGKPHAVIDDVLAGMNRERKILLTVN 237 +M + A + +T++ Y + H S L G H ID L N R I++ Sbjct: 177 LMRSDCAYAKRTAKDAMTIEDYLSLPHAAPSQILPGY-HGTIDTFLEKQNLRRNIVVESA 235 Query: 238 QFFTAGRIVASSELITVLPRHLVAATGMAESLVVKELPFQTPEEHVDMLWHERDARNPAH 297 F +V ++L+ + + SL +P + P LWHER + H Sbjct: 236 HFRMLPYMVEKTDLVLTAGQQFTSFYEKTLSLKSYTVPIKFPPLRFYQLWHERVHQATEH 295 Query: 298 KWLRAHLSA 306 KWLRA + A Sbjct: 296 KWLRAQVCA 304 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 69.7 bits (169), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 117/260 (45%), Gaps = 20/260 (7%) Query: 6 LDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPTPR 65 ++L LR F A Q+ TRA+ L +TQP +S+ ++++ D L L R VK T Sbjct: 1 MELRHLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTA 60 Query: 66 AEELWPTVRRALSELEAVIAPDSF----DISRAQNTFRMAMVDATAALWLPSLVRTIMRD 121 E +RAL E++A + D+ ++ + TF ++ + LP ++ + Sbjct: 61 GELFQVYAKRALLEVDAGL--DALNELENLKHGRVTF--GVLSSFGTFHLPPILADFNKV 116 Query: 122 APRIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKTQISHARLYTGQY 181 P IKI ++ L + + LL GD+ V + P T QI+ L+T Sbjct: 117 YPGIKITVLRLRSGEIEERLLDGDLHFGVAYAPSSTE-----------QINVEPLFTVPL 165 Query: 182 VCVMHKNHPLAGQP-LTLDSYCNADHLLVSLSGKPHAVIDDVLAGMNRERKILLTVNQFF 240 V+ +HPL G +TL+ + +++S ++D +L +I++ +N Sbjct: 166 ALVVGDHHPLVGSAGITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIE 225 Query: 241 TAGRIVASSELITVLPRHLV 260 V S L T+L +LV Sbjct: 226 PILATVRHSSLATILSANLV 245 >gi|152980792|ref|YP_001354199.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 65.9 bits (159), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 56/191 (29%), Positives = 82/191 (42%), Gaps = 11/191 (5%) Query: 4 LTLDLNLLRVFDAVMTEQNLTRAANLLAMTQPAVSNALRRLRDTLNDDLVIRTAHGVKPT 63 + L L LR F AV T AA L +TQ A+S +R L L L R V+ T Sbjct: 1 MNLTLRQLRAFVAVAELSQFTLAAERLHITQSALSMLIRELEKELELKLFDRHTRMVRLT 60 Query: 64 PRAEELWPTVRRALSELEAVIAPDSFDISRAQNTFRMAMVDATAALWLPSLVRTIMRDAP 123 EE T RR LSELE + ++ + +A A L +R + P Sbjct: 61 EHGEEFLLTARRVLSELEVAVMQSRESVNYKRGRVAVACSTVLAVTLLTPFMREFAQRHP 120 Query: 124 RIKIRMMPLTTRDPRAMLLRGDIDLAVGFFPGVTAQLADGQGMAKTQISHARLYTGQYVC 183 IK+ + + + LL GD+D +VG Q +++IS +++ +V Sbjct: 121 GIKLMLRDVAEESIKKRLLNGDVDFSVG-----------TQLNPESEISELPIFSDHFVL 169 Query: 184 VMHKNHPLAGQ 194 +M K HPL Q Sbjct: 170 LMPKGHPLTKQ 180 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.134 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 699,312 Number of extensions: 27307 Number of successful extensions: 128 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 127 Number of HSP's successfully gapped: 9 Length of query: 319 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 236 Effective length of database: 914,170 Effective search space: 215744120 Effective search space used: 215744120 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 129 (54.3 bits)