BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4683.p
         (680 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981266|ref|YP_001355333.1| AsmA protein [Janthinobacterium...   686   0.0  

>gi|152981266|ref|YP_001355333.1| AsmA protein [Janthinobacterium
           sp. Marseille]
          Length = 667

 Score =  686 bits (1769), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 344/653 (52%), Positives = 464/653 (71%), Gaps = 10/653 (1%)

Query: 29  FDWNRAKPWINQRVSTAIGRDFAIDGNLSLHWQRPEPTSSGAESGFWASWIPWPRLQAEN 88
           FDWNRAKPW+N+RVS A GR FAI+G+L L WQR EP +     G W  WIP PRL A +
Sbjct: 21  FDWNRAKPWLNERVSEATGRHFAINGDLILTWQRAEPAT-----GTWRDWIPAPRLSAHD 75

Query: 89  LRLGNPPAFAQSGQMATVQQITFTLNPLPLLVHRISLPSLEVQDPSVSLLRNREAVNNWT 148
           + LGNP        MA +  ITF++NPLPLL   I +PSL++ DP+++L R  +  +NWT
Sbjct: 76  VTLGNPEWAKPDSNMAEIGHITFSVNPLPLLNKTIVIPSLQLDDPNLALQRVSKGKDNWT 135

Query: 149 F-QSDSTGPSTWQLQLGRISLRQGKLALDDAVDKIKLQGEIDTLDPEREKVYGLGWTLRG 207
           F QSD   PS W L L R+   +G++ L D V+ I  +  IDTL+P     + +GW + G
Sbjct: 136 FKQSD---PSEWTLDLQRLYFYRGEITLKDEVEHIDAKANIDTLEPTAVNDFVMGWKISG 192

Query: 208 SFNGAPVSGQGKAGGVLSLQNQQQPYPLQAQVQVGKTRIGVRGTLTKPAELAALDVRLSL 267
           +FNGA +SG GKAG +L+L+N  +P+PL+A++ VGKT I V GT+TKP ELAA+D+RL L
Sbjct: 193 TFNGARISGDGKAGALLALKNVDKPFPLEARLNVGKTSIRVNGTVTKPQELAAIDMRLHL 252

Query: 268 SGASMGNLYPLTGVLLPETPPFATEGRLIGKIAAGGSQWHYQDFSGKVGDSDLNGSLDYQ 327
           SGASM +LYPLTG+ LP+TP F+TEG LIG     G +W Y+ F GKVGDSD+ G+L Y+
Sbjct: 253 SGASMADLYPLTGITLPKTPEFSTEGHLIGVTNKAGGKWTYEKFKGKVGDSDIAGTLVYE 312

Query: 328 TGGTRAQLTGALTSNVLRFDDLAPLIGADSNAEKAQRGAEERQPVDKILPVKTFSTEAWG 387
               R  L+G + SN+L+  DL P+IGADSN  K +RG    QP DK+LPV+ F+TE WG
Sbjct: 313 AKQPRPLLSGTVVSNLLQLSDLGPVIGADSNESKKERGVAANQPADKVLPVEKFTTERWG 372

Query: 388 ALDADVRFTGKRIIRQQGLPITDLQAHLILKDKVLTLDPLNFGVAGGNLTSTIRLDGQAA 447
           ++DADV+ TG +I+    LPI +L  HL L+D V+TL PL FGVAGGNL   I+LDG+  
Sbjct: 373 SIDADVQITGHKIVHSASLPIENLDTHLKLQDSVVTLSPLKFGVAGGNLIGDIKLDGRNN 432

Query: 448 RMKADMKLSARKLKIQQLYPKLDASRTSFGEINGDARLSSSGNSVAAMLGSSNGEVKVLV 507
            +KA+ K+SAR LK++QL+P     + SFGE+NGD  LS +GNS+A++L +SNGE+K L+
Sbjct: 433 VIKAEAKVSARHLKLKQLFPTFQPMQASFGEVNGDTSLSGTGNSIASLLATSNGEIKSLI 492

Query: 508 NQGAISKFLLEAAGLNVGNVVISKLFGDKEVKLNCLAGDLPVNDGVMQVKTLLLDTEDAL 567
           N+G ISK LLE  GLN+GN+VISKLFGDK+VKLNC+A DL V +G++Q +T ++DT+DA+
Sbjct: 493 NEGTISKLLLEQIGLNIGNIVISKLFGDKQVKLNCMATDLSVTNGLVQTRTFIVDTDDAV 552

Query: 568 IVVDGSIDMKRELLDLNVHPRSKGLRIISLRSPLYVKGSFKAPDVGVDKAVLALRAGGAV 627
           + + G++D+ +E L+L + P +KGLRI+SLR+P+YV G F  P VGVD  VLAL+AG AV
Sbjct: 553 MYITGTVDLAKEQLNLTIKPETKGLRIVSLRAPIYVTGEFANPKVGVDTGVLALKAGSAV 612

Query: 628 ALGLLAPVTAILPLINIDGDQKADCGQLLEEVKKAPLLPATGKSKSVKGAPKK 680
           AL ++APVTA+LPLIN+   ++  C  LL+E +  P+ P  GK+   K AP K
Sbjct: 613 ALAVVAPVTALLPLINVGNPEENKCTSLLKEARGKPVAPPPGKTYKAK-APAK 664


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,516,128
Number of extensions: 64500
Number of successful extensions: 194
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 190
Number of HSP's successfully gapped: 2
Length of query: 680
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 590
Effective length of database: 888,291
Effective search space: 524091690
Effective search space used: 524091690
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)