BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4681.p (294 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982593|ref|YP_001352341.1| LysR family transcriptional reg... 100 1e-22 gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducibl... 80 2e-16 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 77 9e-16 gi|152981488|ref|YP_001352078.1| LysR family transcriptional reg... 74 1e-14 gi|152979818|ref|YP_001353268.1| LysR family transcriptional reg... 71 6e-14 >gi|152982593|ref|YP_001352341.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 297 Score = 100 bits (248), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 128/255 (50%), Gaps = 13/255 (5%) Query: 1 MDLTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAE 60 ++L QLR F++VA E + RAA +LH+TQP +S I+AL+ LG+ LF R++ + LT Sbjct: 3 IELRQLRHFVTVAEEMHFGRAALRLHMTQPPLSQSIQALEALLGVQLFRRTSRSVALTPA 62 Query: 61 GNTLLPLAERILADVQELRRHATGLRSSENALSGSLAIGTILDPEFIRLGAFLKLLVERH 120 G LLP A+RIL L +R + + SG L++ + ++ L FL+ E + Sbjct: 63 GIALLPEAQRILQQTAAL---PDLMRRAASGASGRLSLAFVSTADYSVLPHFLREFREAY 119 Query: 121 PQLSTQLSHHMSGSVLNEVRAGKLDVGFFLGD-PGQG---FHALTLTSFTYNVIAPAGWK 176 PQ+ L + L+E+ G++DVG + P + L + S + P G K Sbjct: 120 PQVEIDLREATTDVQLDELAQGRIDVGLLIPPLPDKAKLQLDYLPVLSEPLILAVPKGLK 179 Query: 177 NRVSGK---GWKALARLPWIWTPAE--SAHHRLLSRIFAQHQVKPQTVALVDQESSMLDL 231 V GK +A+A LP I P A H + + + P Q +++ L Sbjct: 180 A-VRGKQTVALQAVAELPLIIFPRRIAPAFHDAILACYRDAGLTPHIGQEAIQMQTIIGL 238 Query: 232 VKSGVGLSLARESIA 246 V +G+G++L +S++ Sbjct: 239 VSAGMGIALVPQSVS 253 >gi|152980366|ref|YP_001352038.1| OxyR hydrogen peroxide-inducible genes activator [Janthinobacterium sp. Marseille] Length = 331 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/183 (29%), Positives = 89/183 (48%), Gaps = 6/183 (3%) Query: 1 MDLTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAE 60 M LT+L+ ++VA E + AAE + QP +S+ IK L++ LG+ LF R + + +T Sbjct: 17 MTLTELKYIVAVAREKHFGHAAEACFVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPL 76 Query: 61 GNTLLPLAERILADVQELRRHATGLRSSENALSGSLAIGTILDPEFIRLGAFLKLLVERH 120 G ++ AER+L ++ A + +++ L G +G I L +K ++ER Sbjct: 77 GAQIVAQAERVLEQTAAIKEIA---KQNKDPLVGPFRLGIIYTIAPYLLPPLVKTIIERV 133 Query: 121 PQLSTQLSHHMSGSVLNEVRAGKLDVGFF-LGDPGQGFHALTLTSFTYNVIAPA--GWKN 177 PQ+ L + + +L +R G+LD L P QG + + V P W N Sbjct: 134 PQMPLVLQENFTVKLLELLRQGELDAAIVALPFPDQGLLVQPVYDEPFVVAVPKHHKWAN 193 Query: 178 RVS 180 R S Sbjct: 194 RDS 196 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 77.4 bits (189), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 76/255 (29%), Positives = 116/255 (45%), Gaps = 16/255 (6%) Query: 1 MDLTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAE 60 +DL LR F+ VA EG+LT+AA+++ + QP +S QI+AL++ LG+ LF R GM LT Sbjct: 4 IDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMELTES 63 Query: 61 GNTLLPLAERILADVQELRRHATGLRSSENALSGSLAIG----TILDPEFIRLGAFLKLL 116 G LL A IL V G+R SG LA+G L P FI A ++ Sbjct: 64 GQALLIDARLILEQVNT---TIEGVRRISLGESGRLAVGFTESAALHP-FI--PAVIRAF 117 Query: 117 VERHPQLSTQLSHHMSGSVLNEVRAGKLDVGFFLGDPGQGFHALTLTSFTYNVIAPAGWK 176 ++ P + + + ++ ++R +LDV F G T +I Sbjct: 118 RQKSPGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMETMLVEEMIVALPIT 177 Query: 177 NRVSGK----GWKALARLPWIWTPAESAHHRLLSRIFAQHQV--KPQTVALVDQESSMLD 230 +R++ + ALA +I S S I A P+ V + S L Sbjct: 178 HRLAQRRKSLPLTALAEDDFILNRRPSGPGLYDSVIAACRAAGFSPRVVQEAKKNLSTLS 237 Query: 231 LVKSGVGLSLARESI 245 LV +G+G+S+ S+ Sbjct: 238 LVAAGLGVSIVPASM 252 >gi|152981488|ref|YP_001352078.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 326 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/154 (34%), Positives = 78/154 (50%), Gaps = 10/154 (6%) Query: 3 LTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAEGN 62 L QL+ F +VA + +RAAE+LHLTQPAVS Q+K L+E GLALF + + LT G+ Sbjct: 6 LRQLKVFETVARHLSFSRAAEELHLTQPAVSTQVKKLEEHAGLALFEQLGKKIYLTPGGS 65 Query: 63 TLLPLAERILADVQELRRHATGLRSSENALSGSLAIGTILDPEFIRLGAFLKLLVE---R 119 LL + I+ QE T + G L + I ++ F +LLVE Sbjct: 66 ELLHYSRTIIQQFQEAEDAMTQFKG---ITGGKLNVAVISAGDYF----FPRLLVEFARS 118 Query: 120 HPQLSTQLSHHMSGSVLNEVRAGKLDVGFFLGDP 153 H ++ LS H +LN++ + D+ + P Sbjct: 119 HQGVTLNLSVHNREGLLNQMTSNLTDIAIMVRPP 152 >gi|152979818|ref|YP_001353268.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 71.2 bits (173), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 68/253 (26%), Positives = 113/253 (44%), Gaps = 13/253 (5%) Query: 1 MDLTQLRAFISVAHEGNLTRAAEKLHLTQPAVSLQIKALQESLGLALFNRSAAGMVLTAE 60 DL LR +++A G+L++AA + A S +++ ++ GL LF RSA GM LT Sbjct: 3 FDLIDLRLLVAIADAGSLSKAAASFPIALSAASNRLRHFEQRSGLTLFQRSAEGMHLTPA 62 Query: 61 GNTLLPLAERILADVQELR---RHATGLRSSENALSGSLAIGTILDPEFIRLGAFLKLLV 117 G +L A +L + + L+ R TG R L+G+ + P LG FL Sbjct: 63 GRLVLDRARHVLLETENLKDTLRDLTGQRRITLRLAGTTVANSTFLPA--ALGPFLA--- 117 Query: 118 ERHPQLSTQLSHHMSGSVLNEVRAGKLDVGFFLGD-PGQGFHALTLTSFTYNVIAPAG-- 174 +P++ QL H S VL V++G+++VG G+ L ++ P+G Sbjct: 118 -DYPEIDLQLVEHKSADVLLAVQSGEVEVGVLDGNLATSDVIPLPFRHDKLVLLVPSGHA 176 Query: 175 WKNRVSGKGWKALARLPWIWTPAESAHHRLLSRIFAQHQVKPQTVALVDQESSMLDLVKS 234 R S + AL ++ P E A R + + Q+ + ++ LV Sbjct: 177 LAERPSVQLKDALG-FAFVCLPPERAMQRFIEEMAVQNSRPLRVRVRAPSFYAIAQLVAE 235 Query: 235 GVGLSLARESIAL 247 G+++ E+ AL Sbjct: 236 QAGIAMLPEAAAL 248 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.133 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 657,405 Number of extensions: 26871 Number of successful extensions: 158 Number of sequences better than 1.0e-08: 26 Number of HSP's gapped: 156 Number of HSP's successfully gapped: 26 Length of query: 294 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 211 Effective length of database: 914,170 Effective search space: 192889870 Effective search space used: 192889870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)