BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4679.p (539 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980062|ref|YP_001355331.1| choline dehydrogenase [Janthino... 639 0.0 gi|152982988|ref|YP_001354501.1| glucose-methanol-choline oxidor... 214 1e-56 >gi|152980062|ref|YP_001355331.1| choline dehydrogenase [Janthinobacterium sp. Marseille] Length = 538 Score = 639 bits (1647), Expect = 0.0, Method: Compositional matrix adjust. Identities = 307/539 (56%), Positives = 398/539 (73%), Gaps = 11/539 (2%) Query: 2 QSAGQYDYIIIGAGTAGCVMANRLSRKTGKSVLLIEAGGRDDYLWIHIPVGYLYCINNPR 61 +SAG+YDYII+GAGTAGCV+ANRL++ G SVLLIEAG +DDY+W+HIP+G+ + I+NPR Sbjct: 3 ESAGKYDYIIVGAGTAGCVLANRLTQDKGVSVLLIEAGAKDDYIWVHIPLGFRHMIDNPR 62 Query: 62 TDWMFRTEADAGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVCGDDSWRWQ 121 TDW +RT+ +AGLNGRSL+YP GK+LGG SS+N MIY RGQ++DYD+WA++ GD SWRW+ Sbjct: 63 TDWRYRTQPEAGLNGRSLLYPSGKILGGSSSVNAMIYQRGQSQDYDNWADLTGDMSWRWE 122 Query: 122 NVLPWFRKSEDYHLGSSEFHGAGGEWRVEKQRLRWDILDAFRDAAAENGIAKVEDFNQGD 181 VLP FRK+ED+ G+ +HG GG+W +EKQ+ W ILDAFR+AAA+ GI K++DFN+G Sbjct: 123 QVLPLFRKTEDHAEGADTWHGVGGDWHIEKQKSSWKILDAFREAAAQTGIPKIDDFNRG- 181 Query: 182 NEGCSYFDVNQKRGVRWNASKAFLRPAMKDGNLTIMTGSHVSRLRMEQGEGGPVCTGVEF 241 EGC+YF +NQK G+RWN +KAFLR + GNL IMTGS V RL +++ E G VCTGVEF Sbjct: 182 -EGCAYFYINQKNGLRWNTAKAFLRTITRRGNLEIMTGSQVKRLIIKETEQGKVCTGVEF 240 Query: 242 TGGGSQWFAQ-AKETILCAGAIGSPHILQMSGIADPALLQQHQIPVVHALPGVGENLQDH 300 GGG +W A ++ETIL AGA GSP ILQ SGI LLQ+H I V+ LPGVGEN+QDH Sbjct: 241 IGGGKEWTADVSRETILTAGAFGSPQILQRSGIGPADLLQEHGIRVLQDLPGVGENVQDH 300 Query: 301 LQMRMVFKVDGARTLNAMASTLLGKMKIGLEYLFMQSGPMSMAPSQLGAFAKSDAQQASA 360 + +RM FKV G ++LN G +GLEY+F + G +S PS LGA +SD QA Sbjct: 301 MPLRMRFKVSGTKSLNTSGRGYFGMAAMGLEYIFKKHGLVSTVPSPLGAMVRSDPTQARP 360 Query: 361 NLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLAAADPALAPRITTNYLSTE 420 NL Y VQP S ++ G + FPAFTA+V NL+P+SRG VR+ AA+ A+AP I NYL+T Sbjct: 361 NLSYQVQPWSQQEVGTGMDDFPAFTANVSNLKPSSRGQVRIGAAEIAVAPVIRMNYLATV 420 Query: 421 ADLTVAADALRLTRRIVASPALARYRPEEYKPGLQYQSQAQLQRAAGDVGTTIFHPVGTC 480 D +A+ A++LTR+IVA+PAL Y PEE P + L+ A ++ +PVG+C Sbjct: 421 EDQNIASAAIQLTRKIVAAPALQPYSPEETNP------ETDLRHLASEIAVAGSNPVGSC 474 Query: 481 RMGRSDDVMAVVDAQCRVRGVAGLSVADASVMPSITSGNTNSPTVMIAEKVASSLLSRA 539 +MG +D AVVD++ RVRGVAGL VADAS+MP IT+G+T + T+MIAEK A LL RA Sbjct: 475 KMGAKNDAQAVVDSELRVRGVAGLRVADASIMPVITAGDTGATTIMIAEKAA--LLIRA 531 >gi|152982988|ref|YP_001354501.1| glucose-methanol-choline oxidoreductase [Janthinobacterium sp. Marseille] Length = 506 Score = 214 bits (545), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 176/543 (32%), Positives = 251/543 (46%), Gaps = 55/543 (10%) Query: 1 MQSAGQYDYIIIGAGTAGCVMANRLSRKTGKSVLLIEAGGRDDYLWIHIPVGYLYCINN- 59 M+S +D +I+G G+AG V+ANRLS + VLL+EAG + P Y I N Sbjct: 5 MKSTRAFDVLIVGGGSAGGVLANRLSEDGNRRVLLLEAGKS------YAPNQYPDVIANA 58 Query: 60 ------PRTDWMFRTEADAGLNGRSLIYPRGKVLGGCSSINGMIYMRGQARDYDHWAEVC 113 P DW + T+ GL G + RGKVLGG S +N + MR +A D+ W Sbjct: 59 NRVGGDPAHDWGYHTQDHTGL-GHDVNAIRGKVLGGSSGVNAAVAMRARAADFARWT-AR 116 Query: 114 GDDSWRWQNVLPWFRKSEDYHLGSSEFHGAGGEWRVEKQRLRWDI--LDAFRDAAAENGI 171 G D W + +VLP F+ E+ G +HG G + V ++ + + + AF A+ G+ Sbjct: 117 GIDGWSFADVLPIFKALENTPTGDDAWHGRSGPFPVRQRTMEENTPSMQAFVRASEAVGM 176 Query: 172 AKVEDFNQGDNEGCSYFDVNQKRGVRWNASKAFLRPAMKD-GNLTIMTGSHVSRLRMEQG 230 ++ DFN + G S + +N G R N A+L ++ NLTIM + V + + Sbjct: 177 KRISDFNGAEQNGVSPYPLNVVDGRRINTGMAYLTDEVRSRPNLTIMGEAEVDVILFD-- 234 Query: 231 EGGPVCTGVEFTGGGSQWFAQAKETILCAGAIGSPHILQMSGIADPALLQQHQIPVVHAL 290 G TGV G S A + IL AGA GSP IL SGI L++ IPV+ A Sbjct: 235 --GRRATGVRLINGDS---FMAGQVILSAGAFGSPAILMRSGIGPATHLEELGIPVLQAA 289 Query: 291 PGVGENLQDHLQMRMVFKVDGARTLNAMASTLLGKMKIGLEYLFMQSGPMSMAPSQLGAF 350 P VG+ L++H V+ ++ ++MAP GA Sbjct: 290 P-VGDRLKEHPFYYNVYA--------------------------LKPEAIAMAPVA-GAI 321 Query: 351 AKSDAQQASA-NLQYHVQPLSLEKFGDPLHAFPAFTASVCNLRPTSRGHVRLAAADPALA 409 + + +A+A L H+ + A L P S G VRLA+ DP Sbjct: 322 IWTHSSEANAGELDLHISGTHIFDAAQSPTGGAIVLACAVTL-PNSVGSVRLASRDPRAM 380 Query: 410 PRITTNYLSTEADLTVAADALRLTRRIVASPALARYRPEEYKPGLQYQSQAQLQRAAGDV 469 P I N+ +DL +A+RL+RRI + + E PG + + LQ A Sbjct: 381 PVIRYNFFQDASDLRRMMEAVRLSRRIGKTSPFSDLIELEMTPGNEIEDDIALQNAVIAG 440 Query: 470 GTTIFHPVGTCRMGRSDDVMAVVDAQCRVRGVAGLSVADASVMPSITSGNTNSPTVMIAE 529 HP T MG D AVVD +VRGV+ L V DAS+MP I S TN T+M+AE Sbjct: 441 VDGYAHPTSTVPMGNDSDETAVVDKNGKVRGVSCLHVVDASIMPDIPSVATNLTTIMLAE 500 Query: 530 KVA 532 ++ Sbjct: 501 AIS 503 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,289,016 Number of extensions: 55067 Number of successful extensions: 125 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 3 Length of query: 539 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 451 Effective length of database: 895,685 Effective search space: 403953935 Effective search space used: 403953935 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)