BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4678.p (256 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 204 5e-54 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 191 4e-50 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 166 1e-42 gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC t... 149 2e-37 gi|152980928|ref|YP_001351786.1| branched-chain amino acid trans... 140 7e-35 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 204 bits (519), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 103/248 (41%), Positives = 152/248 (61%) Query: 1 MTDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSG 60 M+ + LE R + K F + +LQ+ +G ALIGPNGAGK+T FNL++ +SG Sbjct: 1 MSQLALELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSG 60 Query: 61 QILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGE 120 IL NG I P QI R+G+ RSFQI+ +F +SV EN+R + LG + FW+ Sbjct: 61 DILLNGSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENLRCAVLWSLGYRYSFWQRLN 120 Query: 121 SLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMG 180 L+ +++RA Q++EE+ L L Y +RALEI T+A +++LLDEPT GM Sbjct: 121 GLQDVNQRAEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEPTAGMS 180 Query: 181 HEDVDRVTALIKKVSAGRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVSRNPQV 240 + D LI+K+SAG+T+LMVEH+M V+ G+ DRI+VL G ++A + + + NP V Sbjct: 181 RSESDAAVELIRKISAGKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDNIRNNPLV 240 Query: 241 MEAYMGST 248 +AY+G+ Sbjct: 241 QQAYLGTV 248 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 191 bits (485), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 103/251 (41%), Positives = 151/251 (60%), Gaps = 6/251 (2%) Query: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 +IL ++K F G A+S VN++I +G I+ LIGPNGAGKTT FN++T +G Sbjct: 5 IILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFE 64 Query: 64 FNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGL-----QRKLGTSFHFWKN 118 G+ + AP ++A+ GI R+FQ +F M+ LENV IG Q G FH Sbjct: 65 LAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAA 124 Query: 119 GESLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQG 178 ++ +RAM+LLE V + FA T L YG +R LEIA LA +P+L+ LDEP G Sbjct: 125 RREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAG 184 Query: 179 MGHEDVDRVTALIKKVSA-GRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVSRN 237 M + + L+ K+ A G+TIL++EH++ ++ G+CDRI+VL G +AEG +V ++ Sbjct: 185 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQKD 244 Query: 238 PQVMEAYMGST 248 P V+EAY+G + Sbjct: 245 PAVIEAYLGGS 255 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 166 bits (420), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 92/252 (36%), Positives = 145/252 (57%), Gaps = 6/252 (2%) Query: 2 TDVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQ 61 T LE + +T G TAV + + G I +LIGPNGAGKTT +N+++ ++ PTSG+ Sbjct: 6 TTAALELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGR 65 Query: 62 ILFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRK-----LGTSFHFW 116 + G DIT AP QI++ G++RSFQ +++F +V EN+ L K L Sbjct: 66 VKLFGHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQ 125 Query: 117 KNGESLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPT 176 K L +A LL + L++ A T +L YG +R L + LA +P+++LLDEP Sbjct: 126 KFRREEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPA 185 Query: 177 QGMGHEDVDRVTALIKKVS-AGRTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVS 235 G+ + + +++++ +G T+L+VEH+M ++ I D I VL G L+A GS E+ Sbjct: 186 AGLNPSETEAFKEMVRRIGQSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQ 245 Query: 236 RNPQVMEAYMGS 247 +P+V+ AY+GS Sbjct: 246 NDPEVIRAYLGS 257 >gi|152980952|ref|YP_001353499.1| branched-chain amino acid ABC transporter, ATP-binding protein [Janthinobacterium sp. Marseille] Length = 288 Score = 149 bits (376), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 9/248 (3%) Query: 4 VILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQIL 63 VIL ++T F GF A++ +NL I G + +IGPNGAGKTT +++T PTSG Sbjct: 44 VILYLEDITVSFDGFKAINKLNLDISVGELRCIIGPNGAGKTTMMDVITGKTRPTSGTAF 103 Query: 64 FNGR-DITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQ--RKLGTSFHFWKNGE 120 F D+T +IA GI R FQ VF +V EN+ + ++ +++ T+ N E Sbjct: 104 FGQSIDLTKLTEYEIAHAGIGRKFQRPTVFEQHTVFENLELAMKMDKRVKTTLFARLNSE 163 Query: 121 SLKQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMG 180 + +++E +L+ + L L +G+K+ LEI L EP+L+LLDEP GM Sbjct: 164 QIGKIEE----ILKLIRLNGQEHRIAGLLSHGQKQWLEIGMLLMQEPQLILLDEPVAGMS 219 Query: 181 HEDVDRVTALIKKVSAGRTILMVEHNMSVISGIC--DRISVLQRGALLAEGSYEEVSRNP 238 + R L+ ++ +I++VEH+M + I D+++VL G++LAEGS ++V + Sbjct: 220 DAETARTAELLNELRGKHSIMVVEHDMGFVEEIAQGDKVTVLHEGSVLAEGSMQQVQADE 279 Query: 239 QVMEAYMG 246 +V+E Y+G Sbjct: 280 RVIEVYLG 287 >gi|152980928|ref|YP_001351786.1| branched-chain amino acid transporter ATP-binding protein [Janthinobacterium sp. Marseille] Length = 255 Score = 140 bits (353), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 75/257 (29%), Positives = 143/257 (55%), Gaps = 9/257 (3%) Query: 3 DVILETRNLTKEFKGFTAVSAVNLQIERGHIHALIGPNGAGKTTCFNLLTKFLVPTSGQI 62 DV+L +++ + F A+ V+L + RG +++GPNGAGKTT N+LT PT+G + Sbjct: 5 DVLLHATQISRHYGDFIALHNVDLSVSRGEFVSVVGPNGAGKTTLVNVLTGLHQPTTGHV 64 Query: 63 LFNGRDITMDAPAQIARQGIIRSFQISAVFPHMSVLENVRIGLQRKLGTSFHFWKNGESL 122 F+G +I +A +G+ R+FQ++++FP ++V E + + L ++ + + Sbjct: 65 NFDGANIAGVGAVDLATRGLARAFQLTSIFPELTVRETIAVSACSYLNQRWNGFGHLFGS 124 Query: 123 KQLDERAMQLLEEVDLTSFARTTTVDLPYGRKRALEIATTLAMEPELMLLDEPTQGMGHE 182 +++++ ++ + L+ + T LP+GR++ L++A+ A+ P++MLLDEPT G+ Sbjct: 125 RKINDIVVRTADAFGLSPWLDTKGGSLPHGRRKLLDVASAFALHPKVMLLDEPTAGVSTA 184 Query: 183 DVDRVTALIKKVSAG---RTILMVEHNMSVISGICDRISVLQRGALLAEGSYEEVSRNPQ 239 D V + + + I++VEH+M ++S RI +Q G +A+ +E N + Sbjct: 185 DKHGVMETLLRAAKHMGIEAIMLVEHDMDLVSRYSTRIVAMQGGKKIADLPRDEFFANEE 244 Query: 240 VMEAYMGSTSGELQGAH 256 V+ +G +GAH Sbjct: 245 VVSIVVG------KGAH 255 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.378 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 544,611 Number of extensions: 21387 Number of successful extensions: 264 Number of sequences better than 1.0e-08: 50 Number of HSP's gapped: 197 Number of HSP's successfully gapped: 54 Length of query: 256 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 175 Effective length of database: 921,564 Effective search space: 161273700 Effective search space used: 161273700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)