BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4677.p (242 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 193 8e-51 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 174 3e-45 gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 167 7e-43 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 167 7e-43 gi|152981290|ref|YP_001351785.1| ABC-type branched-chain amino a... 157 8e-40 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 193 bits (491), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 96/232 (41%), Positives = 151/232 (65%), Gaps = 4/232 (1%) Query: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKI 70 +L+I +L ++YG+SH+LH +++ + GE+V+LLGRNGAGR+TT+++ MG+V G+I+ Sbjct: 4 LLEIKNLHAFYGKSHVLHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAA-TGTIRF 62 Query: 71 NGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGMSIDEIYEMFP 130 G+E + L T++IA G+GY E R IF +LS +NL+L ++ S D++Y +FP Sbjct: 63 KGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLG---AQAKSRWSADDMYRLFP 119 Query: 131 NLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLKA 190 L+ER++ Q LSGGEQQMLA+ R L L+++DE +EGLAP +V +A + L Sbjct: 120 RLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQMVALVANFLQELVQ 179 Query: 191 KGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLGV 242 +G +++++EQ A ++ R YVM HGQ+V + L+A E LGV Sbjct: 180 RGVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAVRQEWLGV 231 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 174 bits (442), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 86/223 (38%), Positives = 147/223 (65%), Gaps = 4/223 (1%) Query: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKI 70 +LQ++ L +YG +H L ++L+V +G+ ++LLGRNG G+TT L+ +MG++ G++ + Sbjct: 1 MLQVNQLNQYYGAAHTLRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVLPVAAGNVSL 60 Query: 71 NGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGMSI--DEIYEM 128 +G++ L H+ A G+ Y P+ R IF+ L+ EENL++ +K+ + S+ E+YE+ Sbjct: 61 DGRDITKLKPHQRAALGIAYVPQGREIFARLTVEENLLM-GMATKSGKKASVIKGEVYEL 119 Query: 129 FPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTL 188 FP LKE + +G LSGG+QQ LA+AR L +L++LDE +EG+ P I++ + R+I+ L Sbjct: 120 FPVLKEMLHRRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLL 179 Query: 189 KAKG-YTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLE 230 + +G I++ EQ F FA LAD F V+ G++V S + +++ Sbjct: 180 RERGDIGILLCEQYFDFARELADTFVVLSRGEVVASGSQQEMD 222 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 167 bits (422), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 92/247 (37%), Positives = 149/247 (60%), Gaps = 8/247 (3%) Query: 3 TSTSSAPLV------LQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRS 56 T S AP++ L+I ++ YG + ++ ++L VH+GE+VTL+G NGAG++TTLR+ Sbjct: 2 TLKSFAPILDRGSNMLKIEEITVRYGATTGINKISLEVHEGEIVTLIGANGAGKSTTLRA 61 Query: 57 IMGLVGTRKGSIKINGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKT 116 I GL GSI++NG + ++ +G+ +CPE R +F L+ EN+ + + K Sbjct: 62 INGLEPLAHGSIRMNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRKD 121 Query: 117 DRGMSID--EIYEMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLA 174 + D +++ FP L+ER LSGGEQQMLA+AR L + RL++ DE S GLA Sbjct: 122 KAKVRDDMERMFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLA 181 Query: 175 PVIVQALARMITTLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQIVESFASSQLEAKMQ 234 P IV+ + +I ++++G T+++VEQN A + DR Y++E+G IV +S+++ A + Sbjct: 182 PNIVEQIFSLIREIRSEGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPE 241 Query: 235 TLNELLG 241 LG Sbjct: 242 IRRAYLG 248 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 167 bits (422), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 94/214 (43%), Positives = 137/214 (64%), Gaps = 4/214 (1%) Query: 11 VLQISDLQSWYGESHILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMG-LVGTR-KGSI 68 VL+IS L+ YG + V+L VH+GE++TL+G NGAG+TTTL++I G L R +G I Sbjct: 5 VLKISGLKVAYGGIEAVKGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCRVEGHI 64 Query: 69 KINGQETIHLATHKIAHYGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGMS--IDEIY 126 + GQ L + ++ + PE RG+F+ +S +ENL++ F G++ ID+ + Sbjct: 65 EYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDGIAADIDKWF 124 Query: 127 EMFPNLKERRNSQGTRLSGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMIT 186 +FP LKER LSGGEQQMLA+AR L + LLLLDE S GL+P++V+ + +I Sbjct: 125 GVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIFEVIR 184 Query: 187 TLKAKGYTIVMVEQNFRFAAPLADRFYVMEHGQI 220 T+ A+G TI++VEQN + A A+R YVME G + Sbjct: 185 TVSAQGITILLVEQNAKLALQAANRAYVMESGLV 218 >gi|152981290|ref|YP_001351785.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 235 Score = 157 bits (396), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 132/218 (60%), Gaps = 2/218 (0%) Query: 26 ILHNVNLNVHQGEVVTLLGRNGAGRTTTLRSIMGLVGTRKGSIKINGQETIHLATHKIAH 85 +L ++++ ++ GE+V L+GRNGAG++TT RSIMG + G+IK + THKI Sbjct: 17 VLRDISMRINPGELVCLVGRNGAGKSTTFRSIMGFQALKSGAIKWKNNAINGMQTHKIVE 76 Query: 86 YGVGYCPEERGIFSSLSAEENLMLPPFVSKTDRGMS--IDEIYEMFPNLKERRNSQGTRL 143 G+GY PE +F L+ E+N+ LP + K+ R IDE Y +FP LK+ + G +L Sbjct: 77 LGLGYTPEGSDVFGDLTVEDNIALPTWTRKSARSAQERIDEAYAVFPKLKQYLHRGGQQL 136 Query: 144 SGGEQQMLAVARILRTGARLLLLDEISEGLAPVIVQALARMITTLKAKGYTIVMVEQNFR 203 SGGE++M+++AR L LLLLDE EGL+P I+ ++ + ++ +G +++ E NF Sbjct: 137 SGGERKMVSIARALALDPELLLLDEAFEGLSPAIIPTISEGLQSILKQGRGVLLAESNFY 196 Query: 204 FAAPLADRFYVMEHGQIVESFASSQLEAKMQTLNELLG 241 P ADR YV+E G+IV +Q EA T+ + G Sbjct: 197 HLPPFADRLYVIERGEIVFEGTLAQAEADAATMKIIKG 234 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.371 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 517,029 Number of extensions: 20457 Number of successful extensions: 224 Number of sequences better than 1.0e-08: 52 Number of HSP's gapped: 174 Number of HSP's successfully gapped: 53 Length of query: 242 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 161 Effective length of database: 921,564 Effective search space: 148371804 Effective search space used: 148371804 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)