BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4675.p (294 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980464|ref|YP_001352469.1| branched-chain amino acid trans... 140 8e-35 gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC t... 137 9e-34 gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC t... 129 2e-31 gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino a... 119 2e-28 gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC t... 108 4e-25 >gi|152980464|ref|YP_001352469.1| branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 290 Score = 140 bits (354), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 103/295 (34%), Positives = 169/295 (57%), Gaps = 15/295 (5%) Query: 8 LQALLSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLTYLGLN 67 + LL L LV GS YA+L +GL +IFG++ V+NFAHG LY LGA++A+ + G+N Sbjct: 1 MDQLLQHTLNALVLGSTYALLGIGLTLIFGIMRVVNFAHGELYALGAYVAYGVVAMFGMN 60 Query: 68 YWVMLIVAPILVGLFGILIEKTMLRW--LYKLDHLYGLLLTFGITLMIEGIFRSIYGVSG 125 ++ LIVA I+ LFG IE +LR L +D + +L+ G+ ++++ ++G G Sbjct: 61 FFGSLIVAAIVGFLFGTAIEYFLLRRRDLKAIDEV--MLIMIGVMIIMQNAELLMWG--G 116 Query: 126 QPYSVPD-LLQGATNLGFMVLPNYRAWVVVASLVVCFATWFVIEKTRLGAYLRAGTENPK 184 SVP Q G + + R +V+V +L + + +IE++RLG +RA ++ Sbjct: 117 VAKSVPSPFSQEPIVWGAISVSPIRLFVLVTALALLVIFYLLIERSRLGLAMRATFQDKD 176 Query: 185 MVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGS 244 + G+NV + TLT+ G LA+ AG L APV V+P MG + FA+V++GG+G+ Sbjct: 177 AAKIVGVNVSHVYTLTFALGSCLASVAGALLAPVFVVTPTMGDLASLKAFAIVILGGLGN 236 Query: 245 ILGSIITGLLLGLVE----GLTRVFYPELSATVVFIIMAIVLMVRPAGLFG-KEK 294 + G+ + G +L +VE G Y + + F+++ V++ RP GLF +E+ Sbjct: 237 LPGAALGGFILAIVEEFGAGYISTAYRD---ALGFLVILAVMIFRPQGLFTIRER 288 >gi|152981606|ref|YP_001351788.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 293 Score = 137 bits (344), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 91/286 (31%), Positives = 154/286 (53%), Gaps = 7/286 (2%) Query: 15 LLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFL-----AWMGLTYLGLN-Y 68 LL G+ + +++ GL +IFG+ +IN A G++Y LGA+ +W L ++ + Sbjct: 8 LLAGIFQAAVLFLVASGLQLIFGVQRIINLACGSIYALGAYFGIFVTSWALSKGLPVHLF 67 Query: 69 WVMLIVAPILVGLFGILIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPY 128 +L+ A I++GL GI +E+ ++R +Y + LLLTF + LM + + R +G Q Sbjct: 68 PFVLLGAGIVIGLIGIPLER-LIRTIYNRPESFQLLLTFAVMLMFQDVLRFFWGADPQQL 126 Query: 129 SVPDLLQGATNLGFMVLPNYRAWVVVASLVVCFATWFVIEKTRLGAYLRAGTENPKMVEA 188 + G + + +P Y V+ ++ + + + KT+ G LRA EN + A Sbjct: 127 PNVSMTFGTMSAFGVSMPTYNVMVIAVAVTLAIGMAYFLGKTKTGKILRATAENRETSAA 186 Query: 189 FGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGSILGS 248 GINV + + + G L G L P S MG L++ FAVVVIGG+GS+ G+ Sbjct: 187 MGINVTRVYVMVFTLGTMLGTIGGALVIPNAAASLEMGVELVVEAFAVVVIGGLGSMKGA 246 Query: 249 IITGLLLGLVEGLTRVFYPELSATVVFIIMAIVLMVRPAGLFGKEK 294 + L++GL+ L+ ++YPE ++ I+ VL+ +PAGL+GK + Sbjct: 247 AVGALIVGLIRALSAMYYPEAEILAIYAIVLAVLIWKPAGLYGKAE 292 >gi|152980081|ref|YP_001353240.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 315 Score = 129 bits (325), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 81/219 (36%), Positives = 126/219 (57%), Gaps = 3/219 (1%) Query: 12 LSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLTYLGLNYWVM 71 L LL GL G MLS GL +IF ++ V+NFAH + YM+GA+ A+ +G +W Sbjct: 5 LISLLNGLSYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMIGAYFAYSISNAIG--FWPA 62 Query: 72 LIVAPILVGLFGILIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSGQPYSVP 131 L++AP+ VGL G L+E+ LR ++K + LL TFG++ +I + + I+G PYS+P Sbjct: 63 LVLAPLAVGLLGALVERFGLRAVHKYGKIPELLFTFGLSYVIVELVQLIWGRVAVPYSIP 122 Query: 132 DLLQGAT-NLGFMVLPNYRAWVVVASLVVCFATWFVIEKTRLGAYLRAGTENPKMVEAFG 190 LQG+ L P YR ++++ ++++ A +F + +TR+G ++A +P+MVEA G Sbjct: 123 PELQGSLFTLYTTTFPIYRGFMMLVAILMLAAIYFTLTRTRIGLVIQAALTHPQMVEALG 182 Query: 191 INVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNL 229 NVP + + G ALA AGV+ P M L Sbjct: 183 HNVPRVFMWVFAGGCALAGLAGVIGGNAFVTEPNMAHAL 221 >gi|152980537|ref|YP_001353497.1| ABC-type branched-chain amino acid transport system permease protein [Janthinobacterium sp. Marseille] Length = 538 Score = 119 bits (298), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 95/287 (33%), Positives = 149/287 (51%), Gaps = 11/287 (3%) Query: 14 QLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGL--------TYLG 65 +L G+ GS + +LGLA+ FGL+ +IN AHG L M+GA+ ++ + Sbjct: 245 KLFYGISLGSVLLLAALGLAITFGLMGIINMAHGELLMIGAYTTYVCQLVFRKFFPEAID 304 Query: 66 LNYWVMLIVAPILVGLFGILIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFRSIYGVSG 125 V L A I+ GI +E+ ++RWLY L LL T+GI+L++ RSI+G Sbjct: 305 AYLLVALPAAFIVAAAVGIALERLVIRWLYGR-PLETLLCTWGISLILMQGVRSIFGAQN 363 Query: 126 QPYSVPDLLQGA-TNLGFMVLPNYRAWVVVASLVVCFATWFVIEKTRLGAYLRAGTENPK 184 + P + G T LG +VL R ++ +L V A W ++ KTRLG ++RA +N + Sbjct: 364 VEVANPSWMSGGVTVLGSLVLSYNRIVIIFFALFVVLAVWLILNKTRLGLFVRAVMQNRR 423 Query: 185 MVEAFGINVPLMVTLTYGFGVALAAFAGVLAAPVIQVSPLMGSNLIITVFAVVVIGGMGS 244 M G++ + +T+G G +A GV + + V P +G I+ F VVV+GG+G Sbjct: 424 MAACVGVSTGKIDMMTFGLGCGIAGLGGVALSQLGNVGPDLGQGYIVDSFMVVVLGGVGQ 483 Query: 245 ILGSIITGLLLGLVEG-LTRVFYPELSATVVFIIMAIVLMVRPAGLF 290 + G++I LG V L V L+ + + + I + RP GLF Sbjct: 484 LAGTVIAAFGLGEVNKFLEPVAGAVLAKIAILVFIIIFIQKRPQGLF 530 >gi|152980329|ref|YP_001354238.1| branched chain amino acid ABC transporter permease [Janthinobacterium sp. Marseille] Length = 309 Score = 108 bits (270), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 95/305 (31%), Positives = 166/305 (54%), Gaps = 28/305 (9%) Query: 12 LSQLLLGLVNGSFYAMLSLGLAVIFGLLNVINFAHGTLYMLGAFLAWMGLTYL------- 64 + Q++ GLV GS YA+++LG +++G+LN+INFAHG + M+GA GLT L Sbjct: 5 IQQIINGLVLGSMYALVALGYTMVYGVLNLINFAHGDVLMIGAM---AGLTILKMLNTVA 61 Query: 65 -GLNYWVMLIVA-----PILVGLFGILIEKTMLRWLYKLDHLYGLLLTFGITLMIEGIFR 118 L V LI+A P+ V + +LIE+ R L L L+ G++++++ + Sbjct: 62 PDLPGIVKLIIAILGAIPVCVAV-NVLIERVAYRRLRNAPRLAPLITAIGVSILLQTLAM 120 Query: 119 SIYGVSGQPYSVPDLLQGATNLGFMVLPNYRAWVVVASLVVCFATWFVIEKTRLGAYLRA 178 I+G S P+ + +G ++ P +++A++ + +IEKTR+G +RA Sbjct: 121 MIWGRSPIPFPQEMPTEPLHIMGALISPTQVMLLILAAVAMGLLV-LLIEKTRMGRAMRA 179 Query: 179 GTENPKMVEAFGINVPLMVTLTYGFGVALAAFAGVL-AAPVIQVSPLMGSNLIITVFAVV 237 +ENP++ G++ ++ +T+ G LAA AGV+ AA MG + F+ Sbjct: 180 TSENPRVAGLMGVDSNRVIVMTFAIGAILAAIAGVMWAANYSSAQFAMGFVPGLKAFSAA 239 Query: 238 VIGGMGSILGSIITGLLLGLVEGLTRVFYPELSA---------TVVFIIMAIVLMVRPAG 288 V+GG+G+I G+++ G+LLGL+E L + +L+ F+++ IVL +RP+G Sbjct: 240 VLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGGFLGSHYQDIFAFVVLIIVLTLRPSG 299 Query: 289 LFGKE 293 + G+ Sbjct: 300 IMGER 304 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.330 0.147 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 527,909 Number of extensions: 18864 Number of successful extensions: 113 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 103 Number of HSP's successfully gapped: 10 Length of query: 294 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 211 Effective length of database: 914,170 Effective search space: 192889870 Effective search space used: 192889870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 129 (54.3 bits)