BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4674.p (326 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 111 7e-26 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 108 6e-25 gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino a... 96 4e-21 gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino a... 94 9e-21 gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino a... 92 4e-20 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 111 bits (277), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 93/312 (29%), Positives = 155/312 (49%), Gaps = 33/312 (10%) Query: 32 FALFACAFNLLIGYTGLLSFGHAAFLGWAGYMC-----GQALKVWGL---------PTEL 77 F + A + NLL+GYTG LS GH AF G Y G + +WG+ P + Sbjct: 36 FVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLLSLGFDVTLWGMTEPLVVTAKPVWV 95 Query: 78 GLVIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQ-VPFTGGEDGLQGVP 136 G A+ G ++G LA R +G YF ++T++ AQ++ V+L V T G L +P Sbjct: 96 SFACGIAFAAIAGWLLGKLAFRVRGAYFVIVTISFAQVMRMVSLNWVDLTEGPMALNNIP 155 Query: 137 RGKLL----GVLNLENDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKAIKENEPRAISL 192 + GV++L + ++ Y++VLA+AV + L+ +HS G+ + A++ENE A S+ Sbjct: 156 ALTMWVPGEGVIDLASKLSTYWLVLAVAVVSYLLVAAIVHSRIGRAMIALRENETLARSV 215 Query: 193 GYDVARYKLLAFVLSAALSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGTIVG 252 G V Y +A + +A ++G AG + + + ++V+M +VGG GT+ G Sbjct: 216 GIRVTHYLGIATIFAAGIAGAAGGLYAHTVRIIDPDVFMFMFTIMMVIMVIVGGKGTLAG 275 Query: 253 PIVGAVIIIMLENKLGDIGTWLASTTNIDWFNTLGDSVTVVTGFIFIVCVLAFRKGIVGE 312 P+VG ++ +L L + + I W ++ G + I ++ KG+V Sbjct: 276 PVVGGLLFGLLPEVLRGV-----VSPEIQW---------MIYGVLMIAVLVFMPKGVVPS 321 Query: 313 ILALTRKGQAKS 324 L R+ AKS Sbjct: 322 AGNLLRRYSAKS 333 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 108 bits (269), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/325 (29%), Positives = 158/325 (48%), Gaps = 30/325 (9%) Query: 9 VLLILLLAAPFGI---YPVFLMKMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCG 65 V++ LL AP + Y L+ +A+ FNLL GY GLLSFGHA F+ Y Sbjct: 35 VVVALLAIAPLFVSQYYMTLLIPFFAYAVILLGFNLLFGYGGLLSFGHALFIAIGAYAAA 94 Query: 66 QALKVWGLPT-ELGLVIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQVP 124 + G+ + E+ L+ + +I + + LA R GI+F M+TL+ MLF L Sbjct: 95 AMVAKTGMISFEMMLLTAVVASFIISIPIAWLASRFTGIFFGMLTLSFG-MLFHSFLNKF 153 Query: 125 F--TGGEDGLQGVPRGKLLGVLNLENDMT------LYYVVLAIAVAGFALIVRTIHSPFG 176 + TGG+ G++ VPR L G+ + D T YY L + + ++ R + SP+G Sbjct: 154 YYITGGDSGMR-VPRPSLFGMELDQFDKTAFLGGPFYYYCLVMVLLLTWVMWRIVRSPYG 212 Query: 177 QVLKAIKENEPRAISLGYDVARYKLLAFVLSAALSGLAGATKTLVLGFETLTDVHWSMSG 236 L A ++N +A+ LG + + +AFV+SA + + G + G +W+ SG Sbjct: 213 IHLMASRDNAIKALYLGVKIRSVRAIAFVVSAVYASIGGVILGVNTGLADPELAYWTHSG 272 Query: 237 LVVLMTLVGGLGTIVGPIVGAVIIIMLENKLGDIGTWLASTTNIDWFNTLGDSVTVVTGF 296 +V M ++GG +GP++GA + I+L+++L + + W LG Sbjct: 273 HLVFMAVLGGYQEFLGPVLGAFVFILLQDELSSLTQY--------WRFFLGA-------- 316 Query: 297 IFIVCVLAFRKGIVGEILALTRKGQ 321 I + V+ GI+G I KG+ Sbjct: 317 ILAILVVVLPGGIMGAIRKFKSKGE 341 >gi|152980096|ref|YP_001353241.1| ABC-type branched-chain amino acid transport system permease component [Janthinobacterium sp. Marseille] Length = 424 Score = 95.5 bits (236), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 132/268 (49%), Gaps = 11/268 (4%) Query: 13 LLLAAPFGIYPVFLMKMLC----FALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCGQAL 68 LL+ AP + +LC F +FA ++N+L+G G+LSFGHA + G + A+ Sbjct: 21 LLVVAPLIFTQSASLSLLCQMGTFIIFALSYNMLLGQGGMLSFGHAVYSGLGAFCAIHAI 80 Query: 69 KVWG-----LPTELGLVIGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQV 123 + +P L ++G + G G + G + R+ G F MITL + +++F +L Sbjct: 81 NLVAAGNLHIPITLIPLVGGVAGLFFGALFGYVTTRKSGTTFAMITLGIVELVFACSLMF 140 Query: 124 PFTGGEDGLQGVPR--GKLLGVLNLENDMTLYYVVLAIAVAGFALIVRTIHSPFGQVLKA 181 P G +G R G+ + + +YY++ + + +P G+++ A Sbjct: 141 PGFFGGEGGIFTDRVVGEAFFGITYGPQIQVYYLIAGWLLLSTVAMYAFTQTPLGRIINA 200 Query: 182 IKENEPRAISLGYDVARYKLLAFVLSAALSGLAGATKTLVLGFETLTDVHWSMSGLVVLM 241 +++N RA +GYD + L +LSA +G++GA + + +V SG+++L Sbjct: 201 VRDNPERAEFVGYDPQWVRYLTLMLSAFFAGISGALTAINFEIVSAENVSALRSGMILLF 260 Query: 242 TLVGGLGTIVGPIVGAVIIIMLENKLGD 269 T +GG GPI+GA++ + L L + Sbjct: 261 TFIGGTAFFFGPILGAIVGVFLTVVLSN 288 >gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 94.4 bits (233), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 88/328 (26%), Positives = 144/328 (43%), Gaps = 49/328 (14%) Query: 28 KMLCFALFACAFNLLIGYTGLLSFGHAAFLGWAGYMCGQALK------------------ 69 K +C+A+ A A +L+ GYTG+LS GH F GY G L Sbjct: 53 KFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRSIGRDGVYQSNLPDFMV 112 Query: 70 ---------VWGLPTEL--GLVIGTLTGALIGLVMGLLAIRR--QGIYFTMITLAL--AQ 114 W + +++ L L+ + G A R +G+YF++IT A+ A Sbjct: 113 FLNWKEYPWYWWMTEHFWFAMLLVVLVPGLLAFIFGYFAFRSRIKGVYFSIITQAMTFAF 172 Query: 115 MLFFVALQVPFTGGEDGLQGVPRGKLLGVLNLENDMTLYYVVLAIAVAGFALIVRTIHSP 174 ML F F GG +G R + + LY V LA +A + + S Sbjct: 173 MLLFFRNDTGF-GGNNGFTDFKRILGFTITDPSTKAVLYLVTLAFLLAALFVCRAIVTSK 231 Query: 175 FGQVLKAIKENEPRAISLGYDVARYKLLAFVLSAALSGLAGATKTLVLGFETLTDVHWSM 234 G+VL+ ++++E R + +GY+ +KL + LSA + G+AGA +G +++ + Sbjct: 232 LGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVVCGIAGALYVPQVGIINPSEMSPAN 291 Query: 235 SGLVVLMTLVGGLGTIVGPIVGAVIIIMLENKLGDIGTWLASTTNIDWFNTLGDSVTVVT 294 S +V+ VGG G+++GPI+GA + L+ +W + W L Sbjct: 292 SIEMVIWAAVGGRGSLLGPIIGAFTVNGLK-------SWFTAAFPDLWLYAL-------- 336 Query: 295 GFIFIVCVLAFRKGIVGEILALTRKGQA 322 G IFI L +GI+G + ++ A Sbjct: 337 GLIFIFVTLFMPQGILGLVKKFKKQEAA 364 >gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 387 Score = 92.4 bits (228), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 80/264 (30%), Positives = 133/264 (50%), Gaps = 17/264 (6%) Query: 25 FLMKMLCFALF---AC-AFNLLIGYTGLLSFGHAAFLGWAGYMCGQALKVWGLPTELGLV 80 F++ M+C L AC L G+ G+ +F AAF G Y GLP + Sbjct: 92 FVLMMICAVLLYSTACMGLTLQFGFVGVANFAGAAFFGIGSYTTAVLATHTGLPQLANIA 151 Query: 81 IGTLTGALIGLVMGLLAIRRQGIYFTMITLALAQMLFFVALQV-PFTGGEDGLQGVPRGK 139 I + A+IG V+ L +R +G Y ++T+A +LF ++V GG GLQ VP + Sbjct: 152 ISGVVAAIIGSVLILPVLRTRGHYAALVTIAFG-ILFKTFIEVNDVLGGPQGLQ-VPGMQ 209 Query: 140 LLG--------VLNLENDMTLYYVVLAIAVAG--FALIVRTIHSPFGQVLKAIKENEPRA 189 L G + +E + YV+L++ + F L+ S G + ++ +E A Sbjct: 210 LFGHAFNEGFTLFGIEFSFYVSYVLLSLVICAGAFVLVKALERSWVGLSMDVVRTDETAA 269 Query: 190 ISLGYDVARYKLLAFVLSAALSGLAGATKTLVLGFETLTDVHWSMSGLVVLMTLVGGLGT 249 + G +AR+K++AF + +G+AG+ +++GF + +S S L+V + ++GGLG Sbjct: 270 ATFGLHIARWKVIAFTMGNLFAGIAGSVYGMMVGFIAPNNFTFSDSLLLVSIAILGGLGN 329 Query: 250 IVGPIVGAVIIIMLENKLGDIGTW 273 VG I A+I++ML KL I + Sbjct: 330 PVGLIPAAIIVLMLPEKLQFIQEY 353 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.145 0.436 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 610,792 Number of extensions: 23693 Number of successful extensions: 151 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 146 Number of HSP's successfully gapped: 7 Length of query: 326 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 243 Effective length of database: 914,170 Effective search space: 222143310 Effective search space used: 222143310 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)