BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4673.p
         (253 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982049|ref|YP_001355330.1| hypothetical protein mma_3640 [...   273   1e-74

>gi|152982049|ref|YP_001355330.1| hypothetical protein mma_3640
           [Janthinobacterium sp. Marseille]
          Length = 253

 Score =  273 bits (697), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 158/238 (66%), Positives = 193/238 (81%)

Query: 15  GLIDAVVGGGGLVLVPTLFSVFPNTAPATLLGTNKVAGVMGTSAAAINFARKVAVRWSTV 74
           G+IDAVVGGGGL+ +P LFS FPN +  TLLGTNK+A V GTSAAA+ FARKV ++WST 
Sbjct: 15  GMIDAVVGGGGLIQIPALFSAFPNASMGTLLGTNKLASVCGTSAAAVGFARKVKLQWSTA 74

Query: 75  TPAAMAAFACSFFGAYVVTHIPTDLIRKALPFVLIAVALYTLKKKDFGTTHAPTLTGSRE 134
            PAAMAAFA +F GA+ VT IP++ +RK LPF+L+AVA+YT KKKDFG+ HAP   G++E
Sbjct: 75  APAAMAAFAFAFLGAFTVTQIPSEFMRKLLPFILVAVAIYTYKKKDFGSIHAPMHIGAKE 134

Query: 135 MIYAALIGAVIGFYDGVFGPGTGSFLVFLFVRVFSYDFLSASAVSKFVNISTNLAALCWF 194
              A L+GA IGFYDG FGPGTGSFLVFLFVR F +DFL ASAV+K VN++ N+AA+ WF
Sbjct: 135 KWIAILVGAGIGFYDGFFGPGTGSFLVFLFVRFFGFDFLGASAVAKIVNVACNIAAILWF 194

Query: 195 GYSGHVIWQLGLLMAVFNIGGSLVGTRLAMKHGSVFVRKLFLVVVGALILKSSYDAFL 252
           GYS  ++W+L  +MAV N+ GSL+G RLA++HGS FVRK+FLVVV ALILKS YDAFL
Sbjct: 195 GYSAELLWKLAAVMAVCNVLGSLLGIRLAIRHGSGFVRKIFLVVVTALILKSIYDAFL 252


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.141    0.427 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 549,142
Number of extensions: 21406
Number of successful extensions: 118
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 119
Number of HSP's successfully gapped: 1
Length of query: 253
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 172
Effective length of database: 921,564
Effective search space: 158509008
Effective search space used: 158509008
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)