BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4672.p
         (642 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980753|ref|YP_001355329.1| tRNA uridine 5-carboxymethylami...  1146   0.0  

>gi|152980753|ref|YP_001355329.1| tRNA uridine
           5-carboxymethylaminomethyl modification enzyme GidA
           [Janthinobacterium sp. Marseille]
          Length = 645

 Score = 1146 bits (2965), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 538/636 (84%), Positives = 594/636 (93%)

Query: 1   MLFPTQFDVIVVGGGHAGTEAALAAARMGQKTLLLTHNIETLGQMSCNPSIGGIGKGHLV 60
           M+FPT+FDVIVVGGGHAGTEAALA+ARMGQ TLLL+HNIETLGQMSCNPSIGGIGKGHLV
Sbjct: 1   MIFPTKFDVIVVGGGHAGTEAALASARMGQSTLLLSHNIETLGQMSCNPSIGGIGKGHLV 60

Query: 61  KEVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKAAIRSRLENQPNLWL 120
           KEVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYK AIRSRLENQPNLWL
Sbjct: 61  KEVDAMGGAMAIATDEAGIQFRILNSSKGPAVRATRAQADRILYKQAIRSRLENQPNLWL 120

Query: 121 FQQAVDDLMLEGDRVVGAITQAGIRFAGRAVVLTAGTFLDGKIHVGLNNYSGGRAGDPPA 180
           FQQAVDDL++EGDRV+GA+TQ GI+F  RAVVLTAGTFLDGKIHVGLNNYS GRAGDPPA
Sbjct: 121 FQQAVDDLLVEGDRVIGAVTQVGIKFYARAVVLTAGTFLDGKIHVGLNNYSAGRAGDPPA 180

Query: 181 VSLSARLKELKLPQGRLKTGTPPRIDGRTINLAILEEQPGDLDPVPVFSVMGNAAMHPRQ 240
           +SLSARLKELKLPQGRLKTGTPPRIDGR+I+ ++++EQPGDLDP+PVFSVMG+ AMHP+Q
Sbjct: 181 ISLSARLKELKLPQGRLKTGTPPRIDGRSIDFSVMQEQPGDLDPIPVFSVMGSVAMHPKQ 240

Query: 241 MPCWITHTNSRTHDIIRGGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFASKDSHQIYLEP 300
           MPCWITHTN +THD+IR GLDRSPMYTGVIEGVGPRYCPSIEDKIHRFA KDSHQI+LEP
Sbjct: 241 MPCWITHTNEKTHDLIRSGLDRSPMYTGVIEGVGPRYCPSIEDKIHRFAGKDSHQIFLEP 300

Query: 301 EGLTTHEFYPNGISTSLPFDVQLELVRSMKGMENAHILRPGYAIEYDYYDPRGLKSSLET 360
           EGLTT+EFYPNGISTSLPFD+QL LV+SM+G+E+AHILRPGYAIEYDY+DPRGLKS+LET
Sbjct: 301 EGLTTNEFYPNGISTSLPFDIQLALVQSMRGLEHAHILRPGYAIEYDYFDPRGLKSTLET 360

Query: 361 RQVQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQGREAWTPRRDEAYLGVLVDDLVT 420
           + +QGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQ R+AWTPRRDEAYLGV+VDDL+T
Sbjct: 361 KVIQGLFFAGQINGTTGYEEAAAQGMLAGINAALQTQERDAWTPRRDEAYLGVMVDDLIT 420

Query: 421 QGVQEPYRMFTSRAEYRLSLREDNADLRLTEIGRELGCVGDAQWEAFDRKREAVSREMER 480
           +GV EPYRMFTSRAEYRLSLREDNAD+RLTEIGR+LGCVGDAQW  F+ KREAV+RE+ER
Sbjct: 421 KGVLEPYRMFTSRAEYRLSLREDNADMRLTEIGRQLGCVGDAQWAVFETKREAVARELER 480

Query: 481 LKSTWVNPRILAAAEAERVLGKAIEREYNLLDLLRRPNVSYDSLMGLTGAEGQSLAGPGI 540
           L+STWV+PRILA AEAERVLGK IEREY L DLLRRPNVSY++LM L G +GQ LAGPG+
Sbjct: 481 LRSTWVSPRILAEAEAERVLGKGIEREYALADLLRRPNVSYETLMSLKGVDGQDLAGPGV 540

Query: 541 EDGPVREQVEIQVKYAGYIARQANEISRQDHNENLKLPADLDYMEVKALSIEVRQKLNKH 600
            +  VREQVEIQ+KYAGYI RQA E+ R D+ ENLKLP + DYMEVK LS EVRQKL KH
Sbjct: 541 AEDAVREQVEIQLKYAGYIDRQAKEVERHDYYENLKLPQEFDYMEVKGLSFEVRQKLCKH 600

Query: 601 RPETLGQASRISGVTPAALSLLLVHLKKGVLKQPAS 636
           +PETLGQASRISGVTPAA+SLLLVHLKKG  K+ A+
Sbjct: 601 KPETLGQASRISGVTPAAISLLLVHLKKGGFKEFAA 636


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.135    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,462,178
Number of extensions: 63097
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 642
Length of database: 1,221,021
Length adjustment: 89
Effective length of query: 553
Effective length of database: 891,988
Effective search space: 493269364
Effective search space used: 493269364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)