BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4671.p
         (220 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979952|ref|YP_001355328.1| 16S rRNA methyltransferase GidB...   291   3e-80

>gi|152979952|ref|YP_001355328.1| 16S rRNA methyltransferase GidB
           [Janthinobacterium sp. Marseille]
          Length = 220

 Score =  291 bits (744), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 141/209 (67%), Positives = 168/209 (80%)

Query: 10  LTRTLKEGAMAMGLTLSAAQLEQLMAYQALLAKWNKVYNLTALRDPAQMVTHHLLDSLAA 69
           LT  L +GA  + L LS AQ+ +L+ Y AL+AKWN VYNLTA+RDP QMVT HLLDSLAA
Sbjct: 9   LTVLLVQGARDLSLNLSEAQITKLIDYLALMAKWNSVYNLTAVRDPVQMVTQHLLDSLAA 68

Query: 70  VSAFAGAQRVLDVGAGGGLPGIVLAIWAAQAQPQMKITLVDTVQKKTAFLNQVKAQLQLG 129
           VSAF+ A+ VLDVGAGGGLPGIVLAIWAA+A P+M+I+++DTV KKTAFL QVKA+L L 
Sbjct: 69  VSAFSNAKNVLDVGAGGGLPGIVLAIWAAEAHPEMRISMIDTVHKKTAFLTQVKAELNLS 128

Query: 130 NVTVLHARVEQLPVEQQYDVITSRAFAELKDFITWSNHLLQPGGKYIALKGVLPQEEIDR 189
           NV+V  ARVEQ    Q++DVITSRAFA+L DF+ WS HLL  GG+YIALKGV P  E+  
Sbjct: 129 NVSVYTARVEQWQAPQKFDVITSRAFADLSDFVNWSEHLLADGGQYIALKGVAPDTEVAG 188

Query: 190 LPAGWQVQHVQPLQVPGLDAERHLIFMER 218
           LPAGWQV+ V+ LQVP L AERHL+F+ER
Sbjct: 189 LPAGWQVREVRALQVPTLQAERHLVFIER 217


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.132    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 512,948
Number of extensions: 20689
Number of successful extensions: 72
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 1
Length of query: 220
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 140
Effective length of database: 925,261
Effective search space: 129536540
Effective search space used: 129536540
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)