BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4669.p
         (210 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone e...    60   1e-10

>gi|152981789|ref|YP_001352259.1| homoserine/homoserine lactone
           efflux protein [Janthinobacterium sp. Marseille]
          Length = 214

 Score = 59.7 bits (143), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 70/133 (52%), Gaps = 9/133 (6%)

Query: 21  MLFLLLPGPGTFCVLTCSAKGGLRGGFMAQAGLMLGDVVLMFLAAAGVAALLHANPLLFH 80
           +L  + PG G    ++     G+R    +  GL LG + L+ +A AGV +LL A+ + F+
Sbjct: 14  ILIAITPGSGAILSMSHGLSYGVRKTTASILGLQLGLIFLLTVAGAGVGSLLLASEMAFN 73

Query: 81  GMQYMGAAYLAYLG-----GRLLFA---RGEGGGTVVPFSNAAEFRRGFLVTLFNPKAIV 132
            ++ +GA YL YLG      +++ A   + +   T+VP +    F  G L  + NPK ++
Sbjct: 74  IVKTIGAFYLIYLGLSQWRAKVVLAPEMQAQHARTIVP-TFKKRFLHGLLTNVTNPKGVI 132

Query: 133 FYMAFFPLFLDRD 145
           F +A  P F+ +D
Sbjct: 133 FMVAVLPQFIVKD 145


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.333    0.146    0.448 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 379,994
Number of extensions: 12336
Number of successful extensions: 51
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 1
Length of query: 210
Length of database: 1,221,021
Length adjustment: 79
Effective length of query: 131
Effective length of database: 928,958
Effective search space: 121693498
Effective search space used: 121693498
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 127 (53.5 bits)