BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4667.p
         (303 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980336|ref|YP_001355325.1| ParB chromosome partitioning pr...   448   e-127
gi|152983015|ref|YP_001355149.1| chromosome partitionning protei...    60   1e-10

>gi|152980336|ref|YP_001355325.1| ParB chromosome partitioning
           protein [Janthinobacterium sp. Marseille]
          Length = 299

 Score =  448 bits (1152), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 229/295 (77%), Positives = 256/295 (86%), Gaps = 5/295 (1%)

Query: 6   KKSKGLGRGLDALLGGSSDITEEVQAQAAQGLPTVMAVTELQAGKYQPRTRMDEGALNEL 65
           KK KGLGRGL+ALLGG+SD  E + A    G P+V+ VT++QAGKYQPRTRMDEGALNEL
Sbjct: 4   KKQKGLGRGLEALLGGASDFNEAIAA--IPGAPSVLQVTDMQAGKYQPRTRMDEGALNEL 61

Query: 66  AASIKEQGLLQPILIRAIGQKNGRDIYEIIAGERRFRAAKIAGLTEVPVLVKNVDDQTTA 125
           AASIK QGLLQ IL+R I   N R  YEIIAGERRFRAA++AGLTEVPVLVK VDD+ TA
Sbjct: 62  AASIKAQGLLQAILVRPIASGNARQRYEIIAGERRFRAAQLAGLTEVPVLVKEVDDEATA 121

Query: 126 AMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAALAVGRSRSAVSNLLRLLNLAKPV 185
           AMALIEN+QREDLNPLEEAQGIHRLI DF FTHEQAA +VGRSRSAVSNLLRLLNLAKPV
Sbjct: 122 AMALIENIQREDLNPLEEAQGIHRLIADFNFTHEQAANSVGRSRSAVSNLLRLLNLAKPV 181

Query: 186 QTMLMAGDIDMGHARALLAVDSATQIQLANQIVAKRMSVRDAEKLVTRASAEQAA--KPR 243
           QTMLMAGDIDMGHARALLAVD+ATQI LANQ+VAKRMSVR+AEKLV  ++ EQ+   KPR
Sbjct: 182 QTMLMAGDIDMGHARALLAVDAATQITLANQVVAKRMSVREAEKLVVCSTLEQSGGNKPR 241

Query: 244 -EAKDKSRDIARLEEELSDLLATQVSIKTGARNKGQLIINFNDLDALDGVIARLR 297
              K+KSRDI RLEEELSDLLA+QV IK GA+NKGQL+++F DLDALDG+IA+LR
Sbjct: 242 ANGKEKSRDITRLEEELSDLLASQVEIKLGAKNKGQLVVDFADLDALDGIIAKLR 296


>gi|152983015|ref|YP_001355149.1| chromosome partitionning protein
           parB [Janthinobacterium sp. Marseille]
          Length = 299

 Score = 60.5 bits (145), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/129 (32%), Positives = 64/129 (49%), Gaps = 2/129 (1%)

Query: 51  YQPRTRMDEGALNELAASIKEQGLLQPILIRAIGQKNGRDIYEIIAGERRFRAAKIAGLT 110
           + PR R ++   +E+A +I   GL +PI +     ++G + Y ++ GE R +  K AG T
Sbjct: 21  HNPRERNNK-IFDEIADNIHAIGLKKPITVTPRAGEDGTERYLLVCGEGRLKTFKSAGET 79

Query: 111 EVPVLVKNVDDQTTAAMALIENMQREDLNPLEEAQGIHRLITDFAFTHEQAALAVGRSRS 170
            +P LV  V D+    M+L EN+ R    PLE   GI  L  D  +  +  A   G +  
Sbjct: 80  TIPALVVAVSDEDAFIMSLAENIARRQCRPLEILAGIVAL-RDQGYDKKAIAAKTGLTPE 138

Query: 171 AVSNLLRLL 179
            V  +L LL
Sbjct: 139 YVCGILTLL 147


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.315    0.130    0.342 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 560,268
Number of extensions: 20612
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 2
Length of query: 303
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 220
Effective length of database: 914,170
Effective search space: 201117400
Effective search space used: 201117400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 129 (54.3 bits)