BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4664.p (621 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPa... 975 0.0 gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 264 1e-71 gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport sy... 246 3e-66 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 237 2e-63 gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport sy... 219 3e-58 >gi|152982606|ref|YP_001354944.1| ABC-type transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 621 Score = 975 bits (2521), Expect = 0.0, Method: Compositional matrix adjust. Identities = 480/614 (78%), Positives = 539/614 (87%), Gaps = 2/614 (0%) Query: 1 MFSWFEKLVHPYPETHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAAL 60 MF WFEKL+HPY + P PP GF F+W CTKG R YIAAMTL+TA IGVFEALLFA + Sbjct: 1 MFVWFEKLLHPYQDEVPATPPSGFTAFVWACTKGARRYIAAMTLLTAAIGVFEALLFAMM 60 Query: 61 GRIVDWLAKVQPSQLWAQEGHTLVWLVVILAASPLLIALQTLYKHQTLAGNFPMLLRWNF 120 GRIVDWL+KVQP+ LW QE +L+ L IL S +L+ALQT++KHQ LAGNFPM LRWNF Sbjct: 61 GRIVDWLSKVQPALLWTQERSSLLTLAGILVLSVILVALQTMFKHQALAGNFPMQLRWNF 120 Query: 121 HRLMLSQSMSFYQNEFAGRVATKVMQSALAVRDFCMIVGDILVFITIYFATLVGVVGSFD 180 HRLML+QSM FYQ+EFAGRVA KVMQ+ALAVRD CMI+GDILVF+ IYF TLV VVG+FD Sbjct: 121 HRLMLNQSMGFYQDEFAGRVAAKVMQTALAVRDVCMIMGDILVFVLIYFVTLVSVVGTFD 180 Query: 181 MWMLAPFFIWLAAFAVAMRYFVPRLSAVARNQADARSLMTGRITDAYTNIATVKLFSHTG 240 +WML PF W A + VA+RYFVPRLS V+R+QADARSLMTGRITDAYTNI TVKLFSH G Sbjct: 181 LWMLVPFMSWAALYGVALRYFVPRLSKVSRHQADARSLMTGRITDAYTNIGTVKLFSHAG 240 Query: 241 READYARSAMREFLTTVNRQMRLVSGFEVVNHMLNMVLIIGATGVSLYLWTQGKVGVGAV 300 REA YAR+AM+EFL V+ QMRLVSGFEVVNH L+M+LI+ GV+L+LWT G+VG+GAV Sbjct: 241 REAGYARNAMQEFLVAVHNQMRLVSGFEVVNHALSMLLILSTAGVALWLWTLGQVGIGAV 300 Query: 301 AASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAHDVKDAPDAKPLQVRQGEL 360 AA+TAMALRLNGI+HWVMWEM+SLFE VGTVQDGINTL+R H V DAPDA PLQV +GEL Sbjct: 301 AAATAMALRLNGISHWVMWEMASLFEQVGTVQDGINTLSRRHMVVDAPDALPLQVDKGEL 360 Query: 361 RFEGVSFSYGGAAPRPVVDQLDLVIRPGEKIGLVGRSGAGKSTIVNLLLRFYDIEGGRIT 420 FE V F+YGG RPV++QLDL IRPGEK+GLVGRSGAGKSTIVNLLLRFYDIE GRI Sbjct: 361 VFESVGFAYGGT--RPVIEQLDLTIRPGEKVGLVGRSGAGKSTIVNLLLRFYDIEQGRIL 418 Query: 421 IDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENVIYGRPEASDAEMIHAAQRAEAHDF 480 IDGQDIAHVTQ SLRAQ+GMVTQDTSLLHRSVR+N++YGRP+ASD +MI AA+RAEAH+F Sbjct: 419 IDGQDIAHVTQTSLRAQVGMVTQDTSLLHRSVRDNILYGRPDASDEQMIAAAKRAEAHEF 478 Query: 481 IGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEA 540 I TL+DAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSE EA Sbjct: 479 ILTLSDAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLKDAPILLLDEATSALDSEAEA 538 Query: 541 AIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIVEQGTHAELLAANGLYARLWS 600 AIQTSLY+LMEGKTVVAIAHRLSTIAAMDRLIVLD+G IVE+GTH ELL +GLYARLW+ Sbjct: 539 AIQTSLYQLMEGKTVVAIAHRLSTIAAMDRLIVLDKGSIVEEGTHRELLERHGLYARLWA 598 Query: 601 HQSGGFLGEEEEDE 614 HQSGGFLGEE++ E Sbjct: 599 HQSGGFLGEEDDAE 612 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 264 bits (674), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 204/630 (32%), Positives = 310/630 (49%), Gaps = 75/630 (11%) Query: 10 HPYPETHPLPPPRGFMRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAA---------- 59 H P + P+PP R W K + PY+ +G+ A L AA Sbjct: 4 HSAP-SEPVPPASN--RSDWSTLKTLIPYLWTYKWR---VGLALAFLIAAKMANVGVPLV 57 Query: 60 LGRIVDWLAKVQPSQLWAQEGHTLVWLVVILAASPLLIALQTLYKHQTLAGNFPMLLRWN 119 L R++D L + P G T LV+ L +LIA L TL F L + Sbjct: 58 LKRLIDSLT-ITP-------GSTQAMLVLPLG---ILIAYGALRLSTTL---FTELREYT 103 Query: 120 F---------------HRLMLSQSMSFYQNEFAGRVA------TKVMQSALAVRDFCMIV 158 F R + S S+ F+ N G + TK + S ++ F ++ Sbjct: 104 FAKVTQRAVRTIALKVFRHLHSLSLRFHLNRQTGGMTRDIERGTKGISSLISYTLFSILP 163 Query: 159 GDILVFITIYFATLVGVVGSFDMWMLAPFFIWLAAFAVAMRYFVPRLSAVARNQADARSL 218 I + + + + L +D+W + L ++ + R D S Sbjct: 164 TLIEIVLVLGYLVL-----HYDIWFTVITGVALVSYIAFTVIVTEWRTHFRRTMNDLDSK 218 Query: 219 MTGRITDAYTNIATVKLFSHTGREADYARSAMREFLTTVNRQMRLVSGFEVVNHMLNMVL 278 + D+ N TVK F + EA ++ + T + + ++N + ++ Sbjct: 219 ANTKAIDSLINYETVKYFGNEDYEARRYDEGLKRYETAAVKSQ---TSLSLLNTGQSSII 275 Query: 279 IIGATGVSLYLW--TQGKVG----VGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQ 332 A V+L LW TQG + +G + A ++L +++ + + + ++ Sbjct: 276 ---AIAVTLILWRATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADME 332 Query: 333 DGINTLARAHDVKDAPDAKPLQVRQGELRFEGVSFSYGGAAPRPVVDQLDLVIRPGEKIG 392 + L + ++ D PD + L E+RF V FSY A R ++ +D I G Sbjct: 333 RLFSLLDQNREIADKPDTQALVTDGAEVRFSHVDFSY--EANRQILFDVDFTIAAGTTTA 390 Query: 393 LVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSV 452 +VG SG+GKST+ LL RFYD+ G I IDGQD+ VTQ SLR IG+V QDT L + ++ Sbjct: 391 VVGHSGSGKSTLSRLLFRFYDVNQGAILIDGQDVRDVTQTSLRQAIGIVPQDTVLFNDTI 450 Query: 453 RENVIYGRPEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRI 512 N+ YG+P AS A+++ AAQ A H+FI +L D GY+ VGERG+KLSGG++QR+ Sbjct: 451 AYNIAYGKPGASHADIVAAAQSAYIHEFIESLPD-----GYNTMVGERGLKLSGGEKQRV 505 Query: 513 AIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLI 572 AIAR +LK IL+ DEATSALDS+ E AIQ L ++ + +T + IAHRLSTIA +++ Sbjct: 506 AIARTLLKHPAILIFDEATSALDSKSEQAIQAQLKEIAQNRTTLIIAHRLSTIADAAQIL 565 Query: 573 VLDQGRIVEQGTHAELLAANGLYARLWSHQ 602 VLD+GRI+E+GTH +LLA+ G YA++W Q Sbjct: 566 VLDKGRIIERGTHMQLLASEGAYAQMWMRQ 595 >gi|152982656|ref|YP_001351943.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 658 Score = 246 bits (628), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 203/625 (32%), Positives = 299/625 (47%), Gaps = 95/625 (15%) Query: 25 MRFIWFCTKGVRPYIAAMTLMTAIIGVFEALLFAALGRIVDWLAKVQPSQLWAQEGHTLV 84 +R+ W CT + + A VF L+ LG VD Q GH LV Sbjct: 60 VRYPWHCTFAILAALGA--------AVFNLLMPLLLGHAVD------------QAGHLLV 99 Query: 85 ------------------WLVVILAASPLLIALQTLYKHQTLAGNFPMLLRWNFHRLMLS 126 +V++ A +L LQ Y +TLA LR F+ + Sbjct: 100 NARLGADVVRNALLVTGGLIVLVCAVRGILTGLQG-YLGETLAQKVGYDLRMAFYEKLQR 158 Query: 127 QSMSFYQNEFAGRVATKVMQSALAVRDFCMIVGDILVFITIYFATLVGVVGSFDMWMLAP 186 S S++ G + + M VR F + V I L+GV GS W L Sbjct: 159 LSFSYHDKIHTGDLIARGMLDLEGVRAFL----EFGVLRIITLTLLLGV-GS---WRLLS 210 Query: 187 FFIWLAAFAVAMRYFVP--------RLSAVARNQADARSLMTGRITDAYTNIATVKLFSH 238 + L A++ FV RL + S MT + + + V+ F+ Sbjct: 211 IDVTLGLLALSFVPFVAWNAARTGLRLRVSWQRLQKMMSEMTLNMEENLQGVRVVRAFTS 270 Query: 239 TGREADYARSAMREFLTTVNRQMRLVSGFEVVNHMLNMVLIIGA--TGVSLYLWTQG-KV 295 E M +F + +RL S + M NM ++ A T ++L LW G +V Sbjct: 271 RLHE-------MSKFDKISDVALRL-SNQRITERMGNMSAMVLAYYTSMALVLWVGGQRV 322 Query: 296 GVGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGINTLARAH------------- 342 GA+ + L ++ + +G + +N ARA Sbjct: 323 ASGALTVGS-----LTEFLTFITI-LQQPLRQIGMI---VNASARATGSGARLFEVLDTD 373 Query: 343 -DVKDAPDAKPLQVRQGELRFEGVSFSYG-GAAPRPVVDQLDLVIRPGEKIGLVGRSGAG 400 ++KDA +A L++ +G LRFE VSF+YG G R V+ + +R GE +G+VG G+G Sbjct: 374 PEIKDAENAHDLKIDKGLLRFESVSFAYGHGPNDRTVLKDISFEVRKGEVLGIVGAPGSG 433 Query: 401 KSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVRENVIYGR 460 KST+ +L+ RFY++ GGRITIDGQD+ ++ SLR+ + +V Q+ L SV NV Y Sbjct: 434 KSTLAHLIPRFYEVSGGRITIDGQDLRALSLSSLRSAVSLVQQENFLFDTSVHNNVAYPE 493 Query: 461 PEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIAIARVMLK 520 P+A + +I AA A+ H+ + L GY VGERGV LSGGQRQR+ IAR +L Sbjct: 494 PQAGEERVIEAASVAQIHEHVEQLPK-----GYTTRVGERGVALSGGQRQRMTIARGLLD 548 Query: 521 DAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIVLDQGRIV 580 IL+LD++T+A+D E ++ +L ++ + IAHRLS++ D++IVLD+GRIV Sbjct: 549 QPSILVLDDSTAAIDPATEQRVRAALQSSLKDTATIIIAHRLSSLKHADQIIVLDEGRIV 608 Query: 581 EQGTHAELLAANGLYARLWSHQSGG 605 E+GTHAEL+AA G YA LWS Q+ G Sbjct: 609 ERGTHAELIAAGGRYAELWSLQNRG 633 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 237 bits (605), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 152/393 (38%), Positives = 216/393 (54%), Gaps = 22/393 (5%) Query: 217 SLMTGRITDAYTNIATVKLFSHTGREADYARSAMREFLTTVNRQMRLVSGFEVVNHMLNM 276 S +T + D I VK F+ REA R A L +R ++ S F L Sbjct: 310 SQVTNVLADTIPGIRVVKAFAQEKREAARFREANNHNLVVNDRVNKVWSLFSPTVTFLTE 369 Query: 277 VLIIGATGVSLYLWTQGKVGVGAVAASTAMALRLNGIAHWVMWEMSSLFEHVGTVQDGIN 336 + ++ + ++ +QG + VG + A A R + S+ V Q Sbjct: 370 IGLLVVWALGIWQVSQGMITVGVLTAFLAYISRFYT-------RLDSMSRIVSVTQKAAT 422 Query: 337 TLARAHDVKDAPDAKP-------LQVRQGELRFEGVSFSYGGAAPRPVVDQLDLVIRPGE 389 R D+ D + P L QG++ + + F YG R V+ LDL I PGE Sbjct: 423 GAKRIFDILDHVSSVPEATNPVHLDKVQGKITIKDIGFRYGN---RAVIRGLDLTINPGE 479 Query: 390 KIGLVGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLH 449 IGLVG SG+GKST+VNL+ RFYD+ G I +DG D+ + R IG+V Q+ L Sbjct: 480 MIGLVGHSGSGKSTLVNLICRFYDVSAGAIMVDGVDVRSIPIPEYRRNIGLVLQEPFLFF 539 Query: 450 RSVRENVIYGRPEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQR 509 ++ +N+ YG+P+AS ++I AA+ A AH+FI L GYD+ VGERG LSGG+R Sbjct: 540 GTIADNIAYGKPDASREDIIAAARAAHAHEFILRLPH-----GYDSMVGERGQTLSGGER 594 Query: 510 QRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMD 569 QRI+IAR +L D IL+LDEATS++D+ E IQ +L L+ G+T +AIAHRLST+ D Sbjct: 595 QRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTTIAIAHRLSTLRRAD 654 Query: 570 RLIVLDQGRIVEQGTHAELLAANGLYARLWSHQ 602 R++V+D+G+IVE G+H ELL G Y +L+ Q Sbjct: 655 RIVVMDRGQIVEVGSHDELLQREGAYYKLYQAQ 687 >gi|152981213|ref|YP_001352884.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 595 Score = 219 bits (559), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 174/511 (34%), Positives = 270/511 (52%), Gaps = 62/511 (12%) Query: 124 MLSQSMSFYQNEFAGRVATKVMQS------------ALAVRDFCMIVGDI--LVFITIYF 169 +++QS F++ +G V +++ ++A+R+ + G + L F +I Sbjct: 115 VVTQSPQFFETTQSGEVLSRITTDTTLIQTLIGTSISMALRNALLFAGGLVMLFFTSIKL 174 Query: 170 ATLVGVVGSFDMWMLAPFFIWLAAFAVAMRYFVPRLSAVARNQADA---RSLMTGRITDA 226 ++++ + LA + + +F R+ ++R+ D S + G I +A Sbjct: 175 SSII--------------LVTLAFVVLPIVWFGRRVRTLSRDSQDRVADASALAGEILNA 220 Query: 227 YTNIATVKLFSHTGREADYARSAMREFLTTVNRQMRLVSGFEVVNHMLNMVLIIGATGVS 286 + TV+ ++H EA + T R++R S + M+ ++L+ GA + Sbjct: 221 ---MPTVQAYTHEKIEAKRFGQTVENAFKTAMRRIRARS----LLTMIAILLVFGA--IV 271 Query: 287 LYLWTQGKVGVGAVAASTAMALRLNGIAHW---VMWEMSSLFEHVGTVQDGINTLARAHD 343 LW +G AV + +L + V + +L E +G Q R + Sbjct: 272 FVLW----LGAHAVIDGSMSGGQLGQFILYSAIVAGAIGALSEVLGDAQRAAGATERLLE 327 Query: 344 VKD--APDAKPLQVRQ--------GELRFEGVSFSYGGAAPRPVVDQLDLVIRPGEKIGL 393 + +P + P R L + V+F Y P + L + I+ GE + + Sbjct: 328 LLSVQSPISSPATPRSLPPRRANGAALTLDLVTFHYPSRPLTPALSNLSVSIQAGETVAI 387 Query: 394 VGRSGAGKSTIVNLLLRFYDIEGGRITIDGQDIAHVTQDSLRAQIGMVTQDTSLLHRSVR 453 VG SGAGK+++ LLLRFYD + G I +DG DI + +LR IG+V QDT + + Sbjct: 388 VGPSGAGKTSLFQLLLRFYDPQEGVIELDGIDIRELDLHALRNTIGIVPQDTVIFSANAM 447 Query: 454 ENVIYGRPEASDAEMIHAAQRAEAHDFIGTLADAKGRTGYDAHVGERGVKLSGGQRQRIA 513 EN+ YGRPEA+D E+I AA+ A AH+FI L + GY + +GERGV+LSGGQRQRIA Sbjct: 448 ENIRYGRPEATDEEVIAAARLAAAHEFIERLPE-----GYLSFLGERGVRLSGGQRQRIA 502 Query: 514 IARVMLKDAPILLLDEATSALDSEVEAAIQTSLYKLMEGKTVVAIAHRLSTIAAMDRLIV 573 IAR +LK+ P+LLLDEATSALD+E E +Q +L M G+T + IAHRL+T+ DR+IV Sbjct: 503 IARALLKNPPLLLLDEATSALDAESERLVQGALEAAMVGRTTLVIAHRLATVQRADRIIV 562 Query: 574 LDQGRIVEQGTHAELLAANGLYARLWSHQSG 604 ++ G+IVE GTHA L+AA GLYA L + Q G Sbjct: 563 MEHGKIVETGTHASLVAAGGLYASLAALQFG 593 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.325 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,402,803 Number of extensions: 58544 Number of successful extensions: 509 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 422 Number of HSP's successfully gapped: 62 Length of query: 621 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 532 Effective length of database: 891,988 Effective search space: 474537616 Effective search space used: 474537616 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 132 (55.5 bits)