BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4663.p (564 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis pro... 380 e-106 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 364 e-102 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 361 e-101 gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 359 e-100 gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis pro... 352 3e-98 >gi|152983038|ref|YP_001352600.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 573 Score = 380 bits (977), Expect = e-106, Method: Compositional matrix adjust. Identities = 253/532 (47%), Positives = 342/532 (64%), Gaps = 23/532 (4%) Query: 7 KRRSLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGS 66 K +L + RL + F LVLA++ LT ++ + I+ L + +DN K + S Sbjct: 2 KFSNLKIGTRLTIGFFLVLALMAALTACGVNGMQNIQKRLNTIIDDNVHKMNLLQDMSES 61 Query: 67 VHDRAIALRDLTLVSDP-----EVKDVVALIDKLDADYQ-QSAKPLDHIFATMQVNAEER 120 VH + ++ L L+ + E+K VV K DA KP + ER Sbjct: 62 VHIVSHSMGTLVLMRNESEMVLEIKKVVDARSKYDAAILVLEKKPALEV---------ER 112 Query: 121 ASLERIKAIEARTMPLAAKTIAARQAGDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEH 180 E+IK +A + + I + + A LL+ +P W A++ I L++H Sbjct: 113 VLREKIKGAQADARVVNDQIIEFARGNKDEEASALLIKTAEPLNQAWQQALDQSIQLQKH 172 Query: 181 MSQAESAKARGNAHGFQAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAV 240 ++A++ A Q +M L GVAL+ G+V+A +ITR+I + + + VAL Sbjct: 173 ANEADAVAATATYENSQLYMGALSGVALILGIVIAWVITRSISRPIISAMNVANTVAL-- 230 Query: 241 DRGELY-HAVALPAGGAGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNS 299 G+L H A +GQ ++ L +M+ NL VT+VR +AT SA+IA GN Sbjct: 231 --GDLTSHIEITTADESGQ---LLHALKDMNDNLVSIVTQVRHGTETIATASAEIATGNL 285 Query: 300 DLSARTEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVD 359 DLSARTE+QASSL++TAS+ME+LT+TVK N +ARQAN+LA NAS+ A +GG +V QVV+ Sbjct: 286 DLSARTEEQASSLEQTASSMEELTSTVKHNFDNARQANKLALNASDAASRGGVVVAQVVE 345 Query: 360 TMSAINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQR 419 TM IN SSRKI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQR Sbjct: 346 TMGFINGSSRKISDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQR 405 Query: 420 SAAAAKEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLG 479 S+AAAK+I+ LI +SV +D+G+ LVE+AG+TM++IV SVQQVT +M EI+AAS EQS G Sbjct: 406 SSAAAKDIRILIGSSVQKIDAGSLLVEEAGRTMKEIVISVQQVTSIMAEITAASEEQSAG 465 Query: 480 IEEVNKAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQ 531 IE+VN+AIA MDQVTQ NAALVE+A+AA A+L+EQA +L++ V VF+L+ Q Sbjct: 466 IEQVNQAIAQMDQVTQQNAALVEEAAAAAASLREQAENLSKVVRVFKLDNTQ 517 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 364 bits (934), Expect = e-102, Method: Compositional matrix adjust. Identities = 246/557 (44%), Positives = 346/557 (62%), Gaps = 40/557 (7%) Query: 9 RSLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSVH 68 ++L + RL+LSF ++ +L+VL ++ +++ + ++ V D K A + ++ Sbjct: 2 KNLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLN 61 Query: 69 DRAIALRDLTLVSDPEVKDVVALIDKLDADYQQSAKPLDHIFATMQVNAEERASLER--- 125 A +R+ L+++ + A+ Q K D + + V E+ ER Sbjct: 62 QIARNMRNALLMTEKAA---------IQAELTQIGKATDSLNNAL-VELEKTVRSERGRQ 111 Query: 126 ----IKAIEARTMPLAAKTIAARQAGDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEHM 181 ++A ++ +PL I AG D A LL +V+PA + +LA+I+ LID + + Sbjct: 112 TIAGLQADRSKFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNEL 171 Query: 182 SQAESAKARGNAHGFQAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALA-- 239 + A+A A Q + + +A++ V A L TR+I L + V LA Sbjct: 172 MKKSGAEANAKASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLS------QAVVLARK 225 Query: 240 VDRGELYHAVALPAGG-AGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGN 298 V G+L ++ + + GQ ++ L +M+ L VT+VR +A+ S QIA GN Sbjct: 226 VADGDLTGSIVVESKDETGQ---LLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGN 282 Query: 299 SDLSARTEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVV 358 DLS+RTE QASSL+ETAS+ME+LT+TVKQN +ARQ+NQLA +ASE+A +GGA+V +VV Sbjct: 283 LDLSSRTEQQASSLEETASSMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVV 342 Query: 359 DTMSAINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQ 418 DTM IN S++KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR LAQ Sbjct: 343 DTMGEINDSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQ 402 Query: 419 RSAAAAKEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSL 478 RSA+AAKEIK+LI SV V G+RLV+ AG TM ++V SV++VTD+M EI+AAS EQ+ Sbjct: 403 RSASAAKEIKELIGDSVDKVSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTD 462 Query: 479 GIEEVNKAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQEGAVVVT 538 GIE++N+A+ MDQVTQ NAALVE+A+AA +LQ QA L+Q VGVF+L+ G VV Sbjct: 463 GIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQGQASHLSQVVGVFKLDG--HGTTVVN 520 Query: 539 STAPVLQTVQVPTQVAP 555 + VPT AP Sbjct: 521 A---------VPTYTAP 528 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 361 bits (926), Expect = e-101, Method: Compositional matrix adjust. Identities = 239/554 (43%), Positives = 343/554 (61%), Gaps = 24/554 (4%) Query: 10 SLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSVHD 69 ++ + +L LSF +V A+L+V+T++S ++ + S+K +S+D K A + + V+ Sbjct: 6 NMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEVNK 65 Query: 70 RAIALRDLTLVSDPEVKDVVALIDKLDADYQQSAKPLDHIFATMQVNAEERASLERIKA- 128 A+ LRD+ L SDP A I +L +D Q S K ++ ++ A+ + A Sbjct: 66 IALNLRDIMLSSDP------AKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAA 119 Query: 129 IEARTMPLAAKTIAARQAGDLDGAR-QLLLTQV-KPAFVEWLAAINHLIDLEEHMSQAES 186 I AR + A+ + A D A + L QV P V++ A++ + D + + Sbjct: 120 IVARDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAG 179 Query: 187 AKARGNAHGFQAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAVDRGELY 246 A + + + +L G++L+ + + +TR+I L + VA +G+L Sbjct: 180 DAASATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVA----QGDLS 235 Query: 247 HAVALPAGG-AGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLSART 305 V + GQ +MA L M+ NL VT+VR+ +A S +IA GN DLS+RT Sbjct: 236 GPVFVKTTNEVGQ---LMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRT 292 Query: 306 EDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMSAIN 365 E QASSL+ETASAME+LT+TV++N +A+QANQLA +A+++ARQGG++V +V+ TM+AIN Sbjct: 293 EQQASSLEETASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAIN 352 Query: 366 TSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAAK 425 TSS+KI DI GVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRNLAQRSA AA Sbjct: 353 TSSKKIADITGVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAM 412 Query: 426 EIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEEVNK 485 EIK LID SV VD+G++LV+QAG T++++V SV ++ ++ IS AS EQS GIE+V + Sbjct: 413 EIKALIDDSVAKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQ 472 Query: 486 AIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQEGAVVVTSTAPV-- 543 AI +D+ TQ NAALVEQ++AA +L+EQA L Q V +F+L+ V TS AP Sbjct: 473 AIVQIDEGTQQNAALVEQSAAAAQSLREQADQLMQLVSIFKLDRQS----VATSAAPAAG 528 Query: 544 -LQTVQVPTQVAPA 556 L V T + PA Sbjct: 529 KLHLVTTSTALLPA 542 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 359 bits (921), Expect = e-100, Method: Compositional matrix adjust. Identities = 248/558 (44%), Positives = 360/558 (64%), Gaps = 36/558 (6%) Query: 9 RSLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSVH 68 ++L + RLALSF V+A+L+VL V++ ++++ ++ ++ VS D K A + +++ Sbjct: 2 KNLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTLN 61 Query: 69 DRAIALRDLTLVSDP-EVKDVVALIDKLDADYQQSAKPLDHIFATMQVNAEERASLERIK 127 + A +R+ L++D ++K + I+K ++ LD + + R ++ + Sbjct: 62 ETARNMRNALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKS----EKGRTYIKALT 117 Query: 128 AIEARTMPLAAKTIAARQAGDLDGARQLLLTQVKPAFVEWLAAINHLIDLEEHMSQAESA 187 R P+ K +A G A+ LL +V+PA +E++ ++ L++ + ++ Sbjct: 118 DARGRFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMH---- 173 Query: 188 KARGNAHGFQAFMLVLLGVALVAGVVLATL--------ITRAIRGALGAEPDEVKEVALA 239 KA +AH A L+G+ V V+++ ITR + A+G +A Sbjct: 174 KAGEDAHEVSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVG--------LARK 225 Query: 240 VDRGELYHAVALPAGG-AGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGN 298 V G+L + + + GQ ++ L +M+ L VT+VR +AT S+QIA GN Sbjct: 226 VADGDLTGTIVVTSKDETGQ---LLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGN 282 Query: 299 SDLSARTEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVV 358 DLS+RTE+QASSL+ETAS+ME+LT+TVKQN +ARQ+NQLA ASE+A +GGA+V QVV Sbjct: 283 LDLSSRTEEQASSLEETASSMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVV 342 Query: 359 DTMSAINTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQ 418 +TM +IN S+ KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRNLAQ Sbjct: 343 ETMGSINDSANKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQ 402 Query: 419 RSAAAAKEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSL 478 RSA+AAKEIK LID SV V++G+RLV AG TM ++V SV++VTD+MGEI+AAS EQ+ Sbjct: 403 RSASAAKEIKTLIDDSVEKVNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTD 462 Query: 479 GIEEVNKAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQEGAVVVT 538 GIE++N+A+ MDQVTQ NAALVE+A+AA +LQ+QA +L+Q V VF+L+A AV + Sbjct: 463 GIEQINQAVMQMDQVTQQNAALVEEAAAAAESLQDQANNLSQVVSVFKLDA---NAVALQ 519 Query: 539 ST----APVLQTVQVPTQ 552 +T AP + V P Q Sbjct: 520 ATSRVAAPASRPVSKPAQ 537 >gi|152981384|ref|YP_001354274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 568 Score = 352 bits (904), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 253/559 (45%), Positives = 350/559 (62%), Gaps = 22/559 (3%) Query: 10 SLSVAARLALSFALVLAMLLVLTVVSISKVNAIEGSLKRVSEDNSVKQRYAINFRGSVHD 69 ++ + ARLA+ F + ++ L V+++ + N+I ++ + + VK A V Sbjct: 5 NVRIGARLAMGFGAIFILMATLIVLALLRFNSIGEINHQMVDSDWVKAEAAATI--DVTT 62 Query: 70 RAIALRDLTLVSDPEVKDVVALIDKLDADYQQSAKPLDH---IFATMQVNAEERASLERI 126 RA A R++ L+ + E V AL AD ++ K +D + + + +A ++ Sbjct: 63 RANARRNMELLMETESAKVAALF----ADIAKNKKAIDEAVVVLDKLIYTDKGKALMQEF 118 Query: 127 KAIEARTMPLAAKTIAARQAGD--LDGARQLLLTQVKPAFVEWLAAINHLIDLEEHMSQA 184 K EAR +A+ + D D ARQ+LL++ PA + L +++ M + Sbjct: 119 K--EARGKYVASFGKVGKLVADNHRDEARQILLSETLPALDVVQGIVAQLTAVQKKMVEE 176 Query: 185 ESAKARGNAHGFQAFMLVLLGVALVAGVVLATLITRAIRGALGAEPDEVKEVALAVDRGE 244 A A G+ M+VL +A V G+ LA IT +I L E ++A V G+ Sbjct: 177 RGATAAGHIDAAIQMMMVLGALAAVGGIALAYWITHSITKPL----HEAVKIAQTVAAGD 232 Query: 245 LYHAVALPAGGAGQRQSIMAVLSEMSGNLRGTVTRVRDAAAGVATISAQIAAGNSDLSAR 304 L + A + ++ L +M+G+L V VR + +A S QIA+GN DLS+R Sbjct: 233 LTSVI--EAKYKDETGQLLRALKDMNGSLIRIVGEVRHSTEAIAIASTQIASGNMDLSSR 290 Query: 305 TEDQASSLQETASAMEQLTATVKQNDGHARQANQLAHNASEIARQGGAIVDQVVDTMSAI 364 TE+QASSL+ETAS+ME+LT TV+QN +ARQANQLA AS +A +GG +V QVVDTM +I Sbjct: 291 TEEQASSLEETASSMEELTGTVRQNADNARQANQLALTASSVASKGGDVVSQVVDTMGSI 350 Query: 365 NTSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRNLAQRSAAAA 424 N S++KI DIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVR+LAQRSAAAA Sbjct: 351 NDSAKKIADIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAA 410 Query: 425 KEIKQLIDASVGNVDSGTRLVEQAGQTMEQIVASVQQVTDVMGEISAASHEQSLGIEEVN 484 KEIK LI SV V++G+RLV+ AG TM+++VASV++VTD+MGEI+AAS EQ+ GIE++N Sbjct: 411 KEIKTLIGDSVQKVNAGSRLVDDAGSTMQEVVASVRRVTDIMGEITAASQEQTTGIEQIN 470 Query: 485 KAIALMDQVTQHNAALVEQASAAVATLQEQAVSLNQAVGVFQLEAPQEGAVVVTSTAPVL 544 +A+ MD VTQ NAALVEQA+AA A+LQ QA SL Q VGVF+L + A+ V P Sbjct: 471 QAVIQMDSVTQQNAALVEQAAAAAASLQHQAGSLAQVVGVFKLHHSE--ALHVLPATP-K 527 Query: 545 QTVQVPTQVAPALEMARRA 563 TV V Q A A+++A +A Sbjct: 528 ATVSVLPQKAAAVQIANKA 546 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.315 0.126 0.327 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 910,869 Number of extensions: 30634 Number of successful extensions: 269 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 194 Number of HSP's successfully gapped: 21 Length of query: 564 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 476 Effective length of database: 895,685 Effective search space: 426346060 Effective search space used: 426346060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)