BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4662.p (604 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981011|ref|YP_001351961.1| ABC-type transport system, perm... 660 0.0 gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport sy... 76 6e-15 gi|152981278|ref|YP_001351967.1| ABC-type transport system invol... 67 2e-12 gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport... 67 3e-12 gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport sy... 64 2e-11 >gi|152981011|ref|YP_001351961.1| ABC-type transport system, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 587 Score = 660 bits (1703), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/555 (58%), Positives = 413/555 (74%), Gaps = 3/555 (0%) Query: 34 IWRLVKPFWVSEEKWKAWALLVSIIALNLGMVYINVRLNSWNRDMYNVLQSRDYPQFKSL 93 +W+L+KP+WVSEEKWKA LL I+AL L VY+ V N+WNR+ YN L+++++ F Sbjct: 11 VWQLIKPYWVSEEKWKARGLLFVIVALALAAVYLEVLFNTWNREFYNALETKNFKAFTEQ 70 Query: 94 LWQFSGLAFVFVAIAIYSVYLKQALQIRWRYWMSTRYLDRWLAHRAYYRIEQGQQGRLSD 153 LW+F+ LAF F+A+AIY +YL Q+LQ+RWR WM+ +Y+ RWL H+AYYRIEQ +D Sbjct: 71 LWRFTYLAFTFIAVAIYRIYLTQSLQMRWRMWMTQQYMARWLQHQAYYRIEQTGT---AD 127 Query: 154 NPDQRIAEDLHALTSDTLALVLGFISSSVTLFSFIHILWSVSGPLTFSALGQSWVIPGYM 213 NPDQRIAEDL+ LTS TL+L LG +SS VTL SF+ ILWSVSGP++F IPGYM Sbjct: 128 NPDQRIAEDLNLLTSATLSLSLGLLSSVVTLVSFVGILWSVSGPISFMLSSHEITIPGYM 187 Query: 214 VWFVIAYATIGSSVVWWIGRPLVGLSFDQERFEANFRFGLIRVREHAEAVALYRGEPQER 273 VWF IAYA +GS +V W+G PLV ++ ++RFEA+FRFGLIRVRE+AEAVALYRGE +E Sbjct: 188 VWFAIAYAGVGSLIVGWVGWPLVSKNYFRQRFEADFRFGLIRVRENAEAVALYRGETEEA 247 Query: 274 AQLTARLDDIRENWWNIMRLTKKLNVAVNFYGQFAVIFPMLVSAPRYFSGAISLGVLMQI 333 QL R IR+NWW IMR TK LN+ FY QFA IFP L++APRYF+GAI+LG LMQI Sbjct: 248 VQLNGRFQRIRDNWWGIMRTTKSLNLVSTFYSQFANIFPFLMAAPRYFAGAITLGGLMQI 307 Query: 334 SDAFGQVQDALSWFINAFSTLASWKASINRLAGFHADVERASGMTRSIEVAPYSGSAVTV 393 S AFGQVQ ALSWFI+AFS LA WKAS+NRLAGFHA V+ A + V + A+ + Sbjct: 308 SSAFGQVQGALSWFISAFSDLAEWKASVNRLAGFHAAVDAAHDEKEGVVVTLNNVGAILI 367 Query: 394 AGLQLSFPDGRPMMSRLDARVESGEHVLISGPSGCGKSTLIRAMADIWPYGEGRIALPQD 453 + L+ P+G + S L A +++G+ +LI+GPSGCGKSTLIRA+A +WPYG G I +PQ Sbjct: 368 DRVVLNVPNGVALTSELTADIQAGQRILIAGPSGCGKSTLIRALAGVWPYGAGSIEIPQQ 427 Query: 454 APAMFLPQRSYLPIGTLRAALSYPAAEGSFDDALITRYLGLCRLSHLAAQLDVAANWSQA 513 +FLPQRSYLPIGTLRAA++YPA E S+ D I YL LC+L L LD + NWSQ Sbjct: 428 WKLLFLPQRSYLPIGTLRAAIAYPAGENSYTDLAIRHYLDLCKLPQLKKMLDHSDNWSQR 487 Query: 514 LSPGEQQRLAFVRVFLNRPRIVFLDEASSAMDGETEETLYAALPRELPGLTVISIAHRET 573 LSPGEQQRLAFVR L RP +FLDEASSA+D ETEE +Y + +ELP ++S+AHRE+ Sbjct: 488 LSPGEQQRLAFVRALLTRPDALFLDEASSALDTETEELVYQLILQELPEAVIVSVAHRES 547 Query: 574 LARFHDVRWKFVPSA 588 +A++H +RW+FV + Sbjct: 548 VAKYHKMRWQFVADS 562 >gi|152981048|ref|YP_001355244.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 705 Score = 75.9 bits (185), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 89/192 (46%), Gaps = 18/192 (9%) Query: 404 RPMMSRLDARVESGEHVLISGPSGCGKSTLIRAMADIWPYGEGRIALPQ-DAPAMFLP-- 460 R ++ LD + GE + + G SG GKSTL+ + + G I + D ++ +P Sbjct: 465 RAVIRGLDLTINPGEMIGLVGHSGSGKSTLVNLICRFYDVSAGAIMVDGVDVRSIPIPEY 524 Query: 461 --------QRSYLPIGTLRAALSYPAAEGSFDDALITRYLG-----LCRLSHLAAQLDVA 507 Q +L GT+ ++Y + S +D + + RL H + Sbjct: 525 RRNIGLVLQEPFLFFGTIADNIAYGKPDASREDIIAAARAAHAHEFILRLPH--GYDSMV 582 Query: 508 ANWSQALSPGEQQRLAFVRVFLNRPRIVFLDEASSAMDGETEETLYAALPRELPGLTVIS 567 Q LS GE+QR++ R L P I+ LDEA+S++D TE + AL + G T I+ Sbjct: 583 GERGQTLSGGERQRISIARALLIDPHILILDEATSSVDTTTEREIQKALDNLVRGRTTIA 642 Query: 568 IAHRETLARFHD 579 IAHR + R D Sbjct: 643 IAHRLSTLRRAD 654 >gi|152981278|ref|YP_001351967.1| ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Janthinobacterium sp. Marseille] Length = 630 Score = 67.4 bits (163), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 66/265 (24%), Positives = 111/265 (41%), Gaps = 15/265 (5%) Query: 321 FSGAISLGVLMQISDAFGQVQDALSWFINAFSTLASWKASINRLAGFHADVERASGMTRS 380 SG ++LG L+ ++ Q+ L++ + + A + RL D R Sbjct: 291 ISGTMTLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSL-LDQNREIADKPD 349 Query: 381 IEVAPYSGSAVTVAGLQLSFPDGRPMMSRLDARVESGEHVLISGPSGCGKSTLIRAMADI 440 + G+ V + + S+ R ++ +D + +G + G SG GKSTL R + Sbjct: 350 TQALVTDGAEVRFSHVDFSYEANRQILFDVDFTIAAGTTTAVVGHSGSGKSTLSRLLFRF 409 Query: 441 WPYGEGRIALP-QDAPAM----------FLPQRSYLPIGTLRAALSYPAAEGSFDD---A 486 + +G I + QD + +PQ + L T+ ++Y S D A Sbjct: 410 YDVNQGAILIDGQDVRDVTQTSLRQAIGIVPQDTVLFNDTIAYNIAYGKPGASHADIVAA 469 Query: 487 LITRYLGLCRLSHLAAQLDVAANWSQALSPGEQQRLAFVRVFLNRPRIVFLDEASSAMDG 546 + Y+ S + LS GE+QR+A R L P I+ DEA+SA+D Sbjct: 470 AQSAYIHEFIESLPDGYNTMVGERGLKLSGGEKQRVAIARTLLKHPAILIFDEATSALDS 529 Query: 547 ETEETLYAALPRELPGLTVISIAHR 571 ++E+ + A L T + IAHR Sbjct: 530 KSEQAIQAQLKEIAQNRTTLIIAHR 554 >gi|152979961|ref|YP_001354796.1| spermidine/putrescine transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 366 Score = 67.0 bits (162), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/186 (29%), Positives = 90/186 (48%), Gaps = 26/186 (13%) Query: 414 VESGEHVLISGPSGCGKSTLIRAMADIWPYGEGRIAL---------PQDAPAMFLPQR-S 463 +E+GE + GPSGCGK+TL+R +A G+I L P+ P + Q + Sbjct: 26 IEAGEFFTLLGPSGCGKTTLLRMIAGFDVPDAGQILLDGVDLTGVPPEQRPVRTVFQNYA 85 Query: 464 YLPIGTLRAALSYPAAEGSFDDALITRY----LGLCRLSHLAAQLDVAANWSQALSPGEQ 519 P T+ +++P + A I + L RL+ AA+ + LS G++ Sbjct: 86 LFPHMTVGGNIAFPLEMANTPKAEIQKKVDEALEDVRLTGFAAR------YPHELSGGQR 139 Query: 520 QRLAFVRVFLNRPRIVFLDEASSAMDGETEETLYAA---LPRELPGLTVISIAHR--ETL 574 QR++ R + RP+++ LDE SA+D + E + L +E+ G+T I + H E L Sbjct: 140 QRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEV-GITFIYVTHDQAEAL 198 Query: 575 ARFHDV 580 A H + Sbjct: 199 ALSHRI 204 >gi|152982174|ref|YP_001352225.1| ABC-type multidrug transport system, ATPase and permease components [Janthinobacterium sp. Marseille] Length = 578 Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 66/271 (24%), Positives = 115/271 (42%), Gaps = 45/271 (16%) Query: 338 GQVQDALSWFINAFSTLASWKASINRLAGFHADVER----ASGMTRSIEVAPYSGSAVTV 393 GQ Q + F++ + + + +A + ++R A + + I+ P + + Sbjct: 269 GQNQTTVGGFVSFITAMLMLLTPLKNIAEVNGPLQRGLTAAEAVFKLIDAEPERTNGKDL 328 Query: 394 AG----------LQLSFPDGRPM-MSRLDARVESGEHVLISGPSGCGKSTLIRAMADIWP 442 A L ++P + M + ++ V+ GE + G SG GKSTL+ + + Sbjct: 329 AARAAGRLDFVRLGFTYPGQQTMALQDINLSVQPGETIAFVGMSGGGKSTLVNLVPGFYS 388 Query: 443 YGEGRIALPQDAPAMFLPQRSYLPIGTLRAALSYPAAEGS-FDDALI------------T 489 G I L D ++ + + +LR ++ + FDD + T Sbjct: 389 ATAGEIQL--DGVSI-----EEISLSSLRKQIAMVSQHVVLFDDTIAANIAYGDANPDRT 441 Query: 490 RYLGLCRLSHL---------AAQLDVAANWSQALSPGEQQRLAFVRVFLNRPRIVFLDEA 540 R + +HL + + N S+ LS G++QRLA R I+ LDEA Sbjct: 442 RIMAAAHAAHLDEVIAGLPEGLETMIGDNGSR-LSGGQRQRLAIARAIYKDAPILILDEA 500 Query: 541 SSAMDGETEETLYAALPRELPGLTVISIAHR 571 +SA+D E+E + AAL + G T + IAHR Sbjct: 501 TSALDSESERAVQAALDELMKGRTTLVIAHR 531 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.136 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,434,984 Number of extensions: 61355 Number of successful extensions: 327 Number of sequences better than 1.0e-08: 13 Number of HSP's gapped: 323 Number of HSP's successfully gapped: 13 Length of query: 604 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 515 Effective length of database: 891,988 Effective search space: 459373820 Effective search space used: 459373820 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 132 (55.5 bits)