BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4661.p
         (282 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980490|ref|YP_001354939.1| D-alanine transaminase [Janthin...   380   e-107
gi|152979801|ref|YP_001354538.1| branched-chain amino acid amino...    88   5e-19

>gi|152980490|ref|YP_001354939.1| D-alanine transaminase
           [Janthinobacterium sp. Marseille]
          Length = 283

 Score =  380 bits (976), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/280 (66%), Positives = 225/280 (80%), Gaps = 1/280 (0%)

Query: 2   NDPIVYLNGEFTPLSEARVPVLDRGFIFGDGIYEVIPMYRRKAFRGQQHLARLFRSLASI 61
            DPIVYLNG  TPLSEA++ VLDRGFIFGDGIYEV+P+Y RK FR +QHL RLFR LA+I
Sbjct: 3   KDPIVYLNGNMTPLSEAKISVLDRGFIFGDGIYEVVPIYARKPFRPKQHLQRLFRGLAAI 62

Query: 62  GIPNPHDQAGWNALIDQVVQANGLEDQMIYLQVTRGVAKRAHAFPK-EVVPTVLIMTNPM 120
           GI NPH +  W  L+ QVVQA  + DQ+IY+QVTRGVA+R+HAFP  E+ PTV IM NP+
Sbjct: 63  GIDNPHTETEWLDLVSQVVQAAPMSDQLIYIQVTRGVARRSHAFPNTELTPTVFIMGNPL 122

Query: 121 ALPPASAIEQGVACVTMEDRRWLNCQIKSTSLLGNVLAAQFAAENQVTEAIQFRDGFLSE 180
            LP   A   GVACVTMED+RWL+C+IKS SLLGNVLAAQ AAEN   E+IQFRDGFL+E
Sbjct: 123 TLPSDEARATGVACVTMEDKRWLHCEIKSISLLGNVLAAQNAAENNANESIQFRDGFLTE 182

Query: 181 ASSSNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIVLESRRIPREEVLAADELI 240
            S+SNVW+VK G ++ PP DNLILEGIRYGL+EELCA   I  + RRI R+EV AADE++
Sbjct: 183 GSASNVWIVKQGILAGPPTDNLILEGIRYGLIEELCAANDIPFQLRRISRDEVFAADEVL 242

Query: 241 ISSASKEVLPVVKLDGQPVGSGQPGPVFGKVYAAYQAAKA 280
           +SSASKE+LPVV +DG+ +G+G PGP++ K+Y AYQ AK+
Sbjct: 243 LSSASKEILPVVTIDGKSIGNGLPGPIYKKLYKAYQKAKS 282


>gi|152979801|ref|YP_001354538.1| branched-chain amino acid
           aminotransferase [Janthinobacterium sp. Marseille]
          Length = 306

 Score = 88.2 bits (217), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 72/283 (25%), Positives = 126/283 (44%), Gaps = 11/283 (3%)

Query: 3   DPIVYLNGEFTPLSEARVPVLDRGFIFGDGIYEVIPMYRRKA----FRGQQHLARLFRSL 58
           D  ++ +G+     +A V VL     +G G++E +  Y+       FR ++H  RLF S 
Sbjct: 7   DGKIWKDGKLIDWRDATVHVLTHTLHYGMGVFEGVRAYKTDKGTAIFRLREHTERLFNSA 66

Query: 59  ASIGIPNPHDQAGWNALIDQVVQANGLEDQMIYLQVTRGVAKRAHAFPKEVVPTVLIMTN 118
               +  P D         QVV+ N LE   +   V  G  K   +     +   +    
Sbjct: 67  KIFQLKIPFDLETVMEAQLQVVRENKLETCYLRPLVWIGEEKLGISAKGNTIHIAIAAWP 126

Query: 119 PMALPPASAIEQGVACVTME-DRRWLNCQIKSTSLLG----NVLAAQFAAENQVTEAIQF 173
             A      + +G+   T    R  +N  +      G    ++LA Q A  +   EA+  
Sbjct: 127 WGAYLGEDGLNKGIRVKTSSFSRHHVNVSLVRAKACGYYINSILANQEALTDGYDEALLL 186

Query: 174 -RDGFLSEASSSNVWVVKDGKISAPPKDNLILEGIRYGLMEELCAEQGIVLESRRIPREE 232
             DG++SE S  NV++VK+GK+  P   +  L+GI    +  +  + GI +  +RI R+E
Sbjct: 187 DTDGYVSEGSGENVFIVKNGKVYTPDLASC-LDGITRDAVLTMARDLGIEVIEKRITRDE 245

Query: 233 VLAADELIISSASKEVLPVVKLDGQPVGSGQPGPVFGKVYAAY 275
           +   DE   +  + E+ P+ +LD + +G G+ GP+  K+ + +
Sbjct: 246 MYCCDEAFFTGTAAEITPIRELDNRQIGDGKRGPITTKLQSLF 288


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.136    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 593,925
Number of extensions: 22640
Number of successful extensions: 74
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 72
Number of HSP's successfully gapped: 2
Length of query: 282
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 200
Effective length of database: 917,867
Effective search space: 183573400
Effective search space used: 183573400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)