BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4659.p (316 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980163|ref|YP_001352024.1| transcriptional regulator [Jant... 194 4e-51 gi|152983043|ref|YP_001352606.1| LysR family transcriptional reg... 189 2e-49 gi|152980802|ref|YP_001354168.1| LysR family transcriptional reg... 182 2e-47 gi|152982782|ref|YP_001354764.1| LysR family transcriptional reg... 156 2e-39 gi|152981601|ref|YP_001353561.1| LysR family transcriptional reg... 103 2e-23 >gi|152980163|ref|YP_001352024.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 298 Score = 194 bits (494), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 117/299 (39%), Positives = 169/299 (56%), Gaps = 8/299 (2%) Query: 6 KLPNLASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHGKRITIT 65 +LP + +L AF+AAARHG F+ AAEE+ +TP A SH++R LEE +G +LF R G+ +++T Sbjct: 4 RLPPVHALSAFEAAARHGSFAIAAEELCITPSAFSHRIRLLEEFVGERLFLRDGRSVSLT 63 Query: 66 ETGERFATTIRKALGEIAQAADHLRSLNRQQRLVISATPSFASRWLAPRLWKFIDAHPEI 125 E G R+ +R AL +A R Q R+ I+ P+FA P L F +P+I Sbjct: 64 EFGRRYLDVVRDALRSLADFPLPHRHPLAQPRVKITVPPTFARYLFLPHLADFTALYPDI 123 Query: 126 EVVLQSGSHLVDLRLDGVDIGIRFGRGQYSGVVTEKLSEDYYYPVAAPGYRGSRSRKLTR 185 + + L D+ L D+ IRFG G+Y TEKL E+ +PV +P Y + L Sbjct: 124 TIEVFLSVPLYDMALSETDLEIRFGAGKYPDTTTEKLFEEPVFPVVSPAYL-EKIGGLKT 182 Query: 186 PADLAHCTLLRMDTRESWRPWLQLAGLDLPEPRGTLVVEDSSVTLRHAVEGKGVALSRHT 245 PADL LLR E W+ W ++AGLD PEP L ++D + L G GVAL+R Sbjct: 183 PADLQKAQLLR-SALEPWQAWFEVAGLDWPEPATGLRIDDLGLLLEAVRHGYGVALTRKH 241 Query: 246 IAWQEIASGTLVRLFDVAQLC--EEAHYLVHLPEGLEKPGVAAFKAWITQEMQQFHTDS 302 A + IA+G +V LFD+ QL + A+Y+V+ E+P V F W+ M++F+ S Sbjct: 242 FAEEMIANGEVVPLFDI-QLTTPQHAYYMVYEQSVRERPEVVLFMNWM---MERFNMQS 296 >gi|152983043|ref|YP_001352606.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 189 bits (479), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 106/297 (35%), Positives = 170/297 (57%), Gaps = 11/297 (3%) Query: 10 LASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHG---KRITITE 66 L +LRAF+A+ARH FS AA E++VTP A+ QVR LEE LG LF R G R+ T+ Sbjct: 7 LNALRAFEASARHQSFSAAATELNVTPAAVGQQVRGLEEWLGTPLFYRSGTGTSRLMPTD 66 Query: 67 TGERFATTIRKALGEIAQAADHLRSLNRQQRLVISATPSFASRWLAPRLWKFIDAHPEIE 126 T +R IR +++ + L+ + L ++ +P+FA++WL PR+ +F A+P+ + Sbjct: 67 TAQRALPDIRAGFDKLSIGLERLKQASTGGALTVTVSPAFAAKWLMPRIDRFHQAYPQTD 126 Query: 127 VVLQSGSHLVDLRLDGVDIGIRFGRGQYSGVVTEKLSEDYYYPVAAPGYRGSRSRKLTRP 186 + L + +D G+D+G+R+G G + G+ KL+++ YPV +P Y R P Sbjct: 127 LRLDTNLKALDFLASGIDVGVRYGSGDWPGLAAIKLADEEIYPVCSPSYL-KRHGPFVDP 185 Query: 187 ADLAHCTL---LRMDTR---ESWRPWLQLAGLDLPEPRGTLVVEDSSVTLRHAVEGKGVA 240 A LA TL L M ++WR WL AG + L + +S+ L+ A++ +G+A Sbjct: 186 AALAGHTLIHDLSMQNHPGFQTWRSWLDAAGFPSVQSERGLQINNSAAVLQAAIDNQGIA 245 Query: 241 LSRHTIAWQEIASGTLVRLFD-VAQLCEEAHYLVHLPEGLEKPGVAAFKAWITQEMQ 296 L R + +++ G LVRLF+ ++ + A+Y+V+ PE E P VAAF+ W+ E+ Sbjct: 246 LGRSVMMREDLTVGRLVRLFETISSPSKLAYYIVYRPECAELPRVAAFREWLMSEVN 302 >gi|152980802|ref|YP_001354168.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 182 bits (463), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 106/295 (35%), Positives = 171/295 (57%), Gaps = 11/295 (3%) Query: 10 LASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHGK---RITITE 66 L +LRAF+A+ARH FS AA E++VTP A+ VR+LE+ LG LF R R+ TE Sbjct: 7 LNALRAFEASARHQSFSAAAAELNVTPAAVGQLVRSLEDWLGTPLFNRSASGRARLIATE 66 Query: 67 TGERFATTIRKALGEIAQAADHLRSLNRQQRLVISATPSFASRWLAPRLWKFIDAHPEIE 126 +R IR L +++ + L+ L ++ +P+FA++WL PR+ F A P+ + Sbjct: 67 AAQRALPEIRAGLDKLSLGLERLKEGAINGVLTVTVSPAFAAKWLLPRIDTFQAAWPDTD 126 Query: 127 VVLQSGSHLVDLRLDGVDIGIRFGRGQYSGVVTEKLSEDYYYPVAAPGYRGSRSRKLTRP 186 V L + VD G+DIG+R+G G ++G++ EKL ++ YPV +P + R L +P Sbjct: 127 VRLDTSLKPVDFVALGIDIGVRYGNGDWAGLIAEKLLDEEIYPVCSPLLLRQKQR-LRKP 185 Query: 187 ADLAHCTLLRMDTRE------SWRPWLQLAGLDLPEPRGTLVVEDSSVTLRHAVEGKGVA 240 DL TL+ + E SW+ WL++AG+D E + + +S+ L+ A++G+G+A Sbjct: 186 TDLGKETLIHDLSIESHKDFPSWKQWLKVAGVDHTETMRGMRINNSAAVLQAAIDGQGIA 245 Query: 241 LSRHTIAWQEIASGTLVRLF-DVAQLCEEAHYLVHLPEGLEKPGVAAFKAWITQE 294 L+R +A ++A+ LVRLF D+ A+++V+ E P +AAF+ W+ E Sbjct: 246 LARSVMARDDVAASRLVRLFPDIKFTSPLAYFIVYRAERASLPRLAAFRDWLLVE 300 >gi|152982782|ref|YP_001354764.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 156 bits (395), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 108/313 (34%), Positives = 158/313 (50%), Gaps = 7/313 (2%) Query: 6 KLPNLASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHGKRITIT 65 +LP + L AF+A AR G A E+ ++P A+SH+++ LEE LQLF++ +T Sbjct: 7 RLPPIPCLIAFEARARLGSGVLVARELCISPSAVSHRIKQLEEATNLQLFRKTSGEAVLT 66 Query: 66 ETGERFATTIRKALGEIAQAADHLRSLNR-QQRLVISATPSFASRWLAPRLWKFIDAHPE 124 G+ + +R AL ++ + S + +++L I+A P+FA + + PRL + P Sbjct: 67 ADGQAYLEAVRNALNTLSHFGRNPASNTKTRKQLRIAAPPTFAYQIIIPRLSLLQEHFPA 126 Query: 125 IEVVLQSGSHLVDLRLDGVDIGIRFGRGQYSGV-VTEKLSEDYYYPVAAPGYRGSRSRKL 183 + LQ LV L+ D DI IRFG G Y G VT L ED P+ +P Y Sbjct: 127 LRFELQLSVPLVGLKADDSDIEIRFGIGHYPGYHVTRILDEDVL-PMCSPEYLAQHG-PF 184 Query: 184 TRPADLAHCTLLRMDTRESWRPWLQLAGLDLPEPRGTLVVEDSSVTLRHAVEGKGVALSR 243 DL TLLR T E W PW Q AGLD EP GTL D ++ A G G+AL+R Sbjct: 185 ENYEDLQRATLLRC-TIEPWHPWFQAAGLDWREPIGTLQFVDIGSCMQAAAWGHGIALAR 243 Query: 244 HTIAWQEIASGTLVRLFDVAQLCEEAHYLVHLPEGLEKPGVAAFKAWITQEMQQFHTDSD 303 +A ASG LV +FD+A +++ LPE L+ W+ +++ H D+ Sbjct: 244 PKMAASLTASGRLVPVFDLAAKPAYSYFATCLPEALQHTESLEVINWLRSDLE--HEDAM 301 Query: 304 WPGMVQKRPARKK 316 ++ PA K Sbjct: 302 QALQAKQNPAAAK 314 >gi|152981601|ref|YP_001353561.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 300 Score = 103 bits (256), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/289 (29%), Positives = 137/289 (47%), Gaps = 9/289 (3%) Query: 6 KLPNLASLRAFDAAARHGCFSRAAEEVHVTPGAISHQVRALEEDLGLQLFKRHGKRITIT 65 K +L+ L AF A G F+RAA + ++ A+SH ++ALE+ +GL L R + ++ T Sbjct: 2 KRDDLSDLAAFATVAEEGNFTRAAARLGMSQSALSHAIKALEQRIGLPLLTRTTRSVSTT 61 Query: 66 ETGERFATTIRKALGEIAQAADHLRSLNRQQRLVIS-ATPSFASRWLA-PRLWKFIDAHP 123 E GER T+R AL I L L+ R V+ T A+RWL P L +F++ +P Sbjct: 62 EAGERLLRTLRPALDGITAELASLSDLSETPRGVVRITTDQIAARWLIQPVLARFVEQYP 121 Query: 124 EIEVVLQSGSHLVDLRLDGVDIGIRFGRGQYSGVVTEKLSEDYYYP-VAAPGYRGSRSRK 182 I V + + L ++ D D G+R G +++ ++ D VA+P Y +R Sbjct: 122 NITVEVNNDDGLTNIVADRFDAGVRLGELIEQDMISVRIGPDVKVAIVASPAYLANRGLP 181 Query: 183 LTRPADLAH--CTLLRMDTRESWRPWLQLAGLDLPEPR--GTLVVEDSSVTLRHAVEGKG 238 L+ P DL + C R+ T W + E R G L+ D +++ +EG G Sbjct: 182 LS-PQDLKNHRCLNYRLATAGGLYAWEFTRNGRMIEVRVDGPLIFNDWTLSYAAVLEGAG 240 Query: 239 VALSRHTIAWQEIASGTLVRLFDVAQLCEEAHYLVHLPEGLEKPGVAAF 287 + Q+IA G LVR+ ++L + P+ P ++A Sbjct: 241 IGYCFEHQVEQDIADGRLVRMLQDWSPTFHGYHL-YFPDRRRTPALSAL 288 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 778,461 Number of extensions: 32498 Number of successful extensions: 160 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 129 Number of HSP's successfully gapped: 34 Length of query: 316 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 233 Effective length of database: 914,170 Effective search space: 213001610 Effective search space used: 213001610 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)