BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4656.p
         (330 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981087|ref|YP_001354942.1| lipoyl synthase [Janthinobacter...   590   e-170

>gi|152981087|ref|YP_001354942.1| lipoyl synthase [Janthinobacterium
           sp. Marseille]
          Length = 331

 Score =  590 bits (1521), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 283/329 (86%), Positives = 294/329 (89%), Gaps = 8/329 (2%)

Query: 1   MTTELTPAADSSSNATGSARANPLDKQKGAGKTAWIPIKVVAAEKLKKPDWIRVKAGSPT 60
           MTTE  PA   + N        P +KQKGA KT  IPIKV+  E+L KPDWIRVKA SP+
Sbjct: 1   MTTETNPAVTPAYN--------PSEKQKGAAKTIRIPIKVIPMERLPKPDWIRVKAASPS 52

Query: 61  TRFYEIKDILRSNNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD 120
           TRFYEIKDILR+NNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD
Sbjct: 53  TRFYEIKDILRANNLVTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPD 112

Query: 121 PLDPNEPENLAKTIAQLRLSYVVITSVDRDDLRDGGAAHFAACIQRVRELSPETRIEILT 180
           PLD NEPENLAKTIA LRL+YVVITSVDRDDLRDGGA HFA CI+RVRELSP TRIEIL 
Sbjct: 113 PLDVNEPENLAKTIAALRLNYVVITSVDRDDLRDGGAGHFAECIRRVRELSPNTRIEILV 172

Query: 181 PDFRGRMDRALEILKMAPPDVMNHNLETAPRLYKEARPGSDYEYSLSLLKRFKDLHPEVP 240
           PDFRGRMDRALEIL  APPDVMNHNLETAPRLYKEARPGSDYEYSL+LLKRFK  HP  P
Sbjct: 173 PDFRGRMDRALEILNAAPPDVMNHNLETAPRLYKEARPGSDYEYSLNLLKRFKAQHPNTP 232

Query: 241 TKSGIMVGLGETDEEVLQVMRDMRAHNVDMLTIGQYLMPSGDHLPVRRYVHPDTFKMYEE 300
           TKSGIMVGLGETDEEVLQVMRDMRAH+VDMLTIGQYLMPSGDHLPVRRYVHPDTFKMYEE
Sbjct: 233 TKSGIMVGLGETDEEVLQVMRDMRAHDVDMLTIGQYLMPSGDHLPVRRYVHPDTFKMYEE 292

Query: 301 EAYKMGFVHAAVGAMVRSSYHADQQAHGL 329
           EAYKMGF HAAVGAMVRSSYHADQQAHG+
Sbjct: 293 EAYKMGFAHAAVGAMVRSSYHADQQAHGV 321


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 798,039
Number of extensions: 33608
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 330
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 246
Effective length of database: 910,473
Effective search space: 223976358
Effective search space used: 223976358
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)