BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4654.p (472 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 145 5e-36 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 111 8e-26 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 91 1e-19 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 145 bits (366), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 103/343 (30%), Positives = 172/343 (50%), Gaps = 16/343 (4%) Query: 107 LAQPLGVVGIISPWNYPLQLALGPALAALAAGNRVLLKPSELTPLLSALLAELVARY-YA 165 + QP+GV I+PWN+P+ + A+AAG +++KP+E TPL + +AEL R Sbjct: 147 IKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSALAIAELAHRAGIP 206 Query: 166 PEEMAVVTGDAR----IGQAFAALPL-DHLFFTGSTQVGRQVAQLAAANLTPVTLELGGK 220 P + VVT D+ +G+ + P+ H+ FTGST VGR + + A + + LELGG Sbjct: 207 PGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCAPTVKKIGLELGGH 266 Query: 221 SPAILDASCHLESSIRRIAFGKLLNAGQTCVAPDYLLVPRGQAPVVAQRLAQAMSALYPR 280 +P I+ L++++ K NAGQTCV + V Q+L + + + Sbjct: 267 APFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFVQKLGAGAAKI--K 324 Query: 281 LHDNPDYTA----IISARHRERLLALVQQARAAGAQVIEVNPAQEDLGHSRKLAPMLILG 336 + + + +I A+ +++ V A + GA+VI Q LG P ++ Sbjct: 325 VGNGVEQGVLQGPLIDAQAVKKVEQHVSDAVSKGAKVI-TGGKQHALG-GYFYEPTVLSN 382 Query: 337 ATTAMQVMQEEIFGPLLPILEYDALEDAIAHVRQGPRPLALYWFGQDAARRDRVLRQTHA 396 + M +M EE FGP+ ++++ ++A+A LA Y++ +D R RV + Sbjct: 383 ISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSRDIGRVWRVAEKLEY 442 Query: 397 GGVTINDCLWHLVQEEQPFGGVGESGMGAYHGRWGFDTFSKRK 439 G V IN L + E PFGGV +SG+G ++G + + + K Sbjct: 443 GMVGINTGL--ISNEVAPFGGVKQSGLGREGSKYGIEEYLEIK 483 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 111 bits (278), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 177/384 (46%), Gaps = 30/384 (7%) Query: 63 HETRMAELFVVRAG--IAHAQSHLARWMRARRVPTALHFLPGSNRLLAQPLGVVGIISPW 120 H T + L V AG + +A L + R +A +N QPLG+V ISPW Sbjct: 659 HATELIALLVREAGKTLPNAIGELREAIDFLRYYSAQAIASDAN----QPLGLVACISPW 714 Query: 121 NYPLQLALGPALAALAAGNRVLLKPSELTPLLSALLAELVARYYAPEEMAVV---TGDAR 177 N+PL + G AALAA N VL KP+E TPL++ +L+ + PE + +G+ Sbjct: 715 NFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACRAVQLLHQAGVPENALLFLPGSGET- 773 Query: 178 IGQAFAALP-LDHLFFTGSTQVGRQVAQ------LAAANLTPVTLELGGKSPAILDASCH 230 IG P + + FTGSTQV + + + ++ P+ E GG++ I+D+S Sbjct: 774 IGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSISEGKDIPLIAETGGQNTMIVDSSAL 833 Query: 231 LESSIRRIAFGKLLNAGQTCVAPDYLLVPRGQAPVVAQRLAQAMSALYPRL----HDNPD 286 E +R + +AGQ C A L + A Q L AM L R+ H D Sbjct: 834 CEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQTLQMLHGAMQEL--RIGRPDHLATD 891 Query: 287 YTAIISARHRERLLALVQQARAAGAQVIEVNPAQEDLGHSRKLAPMLILGATTAMQVMQE 346 +I A + L A ++QA+AAG QV ++ + + +AP +I A + +Q Sbjct: 892 VGPVIDAEAQAHLQAYIRQAQAAGKQVRQLPLP---VTNGSFVAPCIIEIAD--INELQR 946 Query: 347 EIFGPLLPILEY--DALEDAIAHVRQGPRPLALYWFGQDAARRDRVLRQTHAGGVTINDC 404 E+FGP+L +L Y D L + + L L + D V+R G + +N Sbjct: 947 EVFGPVLHVLRYRRDDLPQLLMDINSTGFGLTLGIHTRIDETIDYVVRHAQVGNIYVNRN 1006 Query: 405 LWHLVQEEQPFGGVGESGMGAYHG 428 + V QPFGG G SG G G Sbjct: 1007 IVGAVVGVQPFGGEGLSGTGPKAG 1030 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 91.3 bits (225), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 97/370 (26%), Positives = 158/370 (42%), Gaps = 40/370 (10%) Query: 103 SNRLLAQPLGVVGIISPWNYPLQLALGPALAALAAGNRVLLKPSELTPLLSALLAELVAR 162 N L QPLGV I+P+N+P + + A ALA GN +LKPSE P S ++AEL+ + Sbjct: 135 DNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPSLMVAELLQQ 194 Query: 163 YYAPEEM-AVVTGDARIGQAFAALP-LDHLFFTGSTQVGRQVAQLAAA---NLTPVTLE- 216 P+ + V+ GD P + + F GST + + AA P+ ++ Sbjct: 195 AGLPDGVFNVLQGDKLAVDGLLQHPDVKAVSFVGSTPIAEYIYATGAARKGGSYPLRVQA 254 Query: 217 LGG-KSPAILDASCHLESSIRRIAFGKLLNAGQTCVAPDYLLVPRGQAPVVAQRLAQAMS 275 LGG K+ ++ +LE ++ + +AG+ C+A A V + ++ Sbjct: 255 LGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISV-------AVAVGDIADKLVA 307 Query: 276 ALYPRLHD---------NPDYTAIISARHRERLLALVQQARAAGAQVIEVNPAQEDLGHS 326 AL PR+ + + ++SA H+ ++ + AGA+++ + GH Sbjct: 308 ALIPRVKSLKVKNGMEADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKVAGHD 367 Query: 327 RK--LAPMLILGATTAMQVMQEEIFGPLLPILEYDALEDAIAHVRQGPRPLALYWFGQDA 384 + L L T M + QEEIFGP+L +L A+ + + + F D Sbjct: 368 KGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLFTSDG 427 Query: 385 ARRDRVLRQTHAGGVTINDCL-----WHLVQEEQPFGGVGESGMGAYH--GRWGFDTFSK 437 R+ G V IN + WH FGG S G H G G +++ Sbjct: 428 NTAREFSRRVEVGMVGINVPIPVPMAWH------SFGGWKRSMFGDTHAYGEEGIKFYTR 481 Query: 438 RKPVFRQARW 447 K + + RW Sbjct: 482 YKSIMQ--RW 489 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.323 0.137 0.412 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,003,556 Number of extensions: 40160 Number of successful extensions: 108 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 100 Number of HSP's successfully gapped: 3 Length of query: 472 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 385 Effective length of database: 899,382 Effective search space: 346262070 Effective search space used: 346262070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)