BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4651.p
         (228 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980494|ref|YP_001352238.1| GTP cyclohydrolase II [Janthino...   293   5e-81

>gi|152980494|ref|YP_001352238.1| GTP cyclohydrolase II
           [Janthinobacterium sp. Marseille]
          Length = 212

 Score =  293 bits (751), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 139/212 (65%), Positives = 166/212 (78%), Gaps = 5/212 (2%)

Query: 1   MSSPIAPDAA-----APEEKLVFVSSCKLPMPWATFELHAFYDEVSGKEHLALTLGEVGN 55
           M++ + P+AA     + E +L + +SC+LP PWATF LHAF +  +GKEH+A+TLG+V +
Sbjct: 1   MNTSLTPNAAIEAAVSSEVELDYAASCELPTPWATFRLHAFVEPATGKEHVAITLGDVTD 60

Query: 56  GEPVLGRVHSECLTGDALFSQRCDCGAQLEAALKKIAKEGRGVLFYLRQEGRGIGLLNKI 115
           GEPVL R+HSECLTGD LFS RCDCG QLEAAL+KIA+EGRG LFYLRQEGRGIGL+NKI
Sbjct: 61  GEPVLARIHSECLTGDGLFSLRCDCGPQLEAALQKIAEEGRGALFYLRQEGRGIGLVNKI 120

Query: 116 RAYHLQDQGADTVEANERLGFPADMRRYTIVLPMLAHLKITSLRLMTNNPRKVKALEDSG 175
           RAY LQD GADTVEANE LGF  D R Y +  PML HLKI++LRLMTNNPRK+KA+E  G
Sbjct: 121 RAYQLQDAGADTVEANEALGFKPDQRNYKLCQPMLRHLKISTLRLMTNNPRKIKAMEQLG 180

Query: 176 ITVAERIALIANHNPFNIGYLGTKARKLGHLL 207
           + V ER+ L+   NPFN  YL TKA KLGHL 
Sbjct: 181 VKVVERVPLVITRNPFNERYLTTKAAKLGHLF 212


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.137    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 554,946
Number of extensions: 22918
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 148
Effective length of database: 925,261
Effective search space: 136938628
Effective search space used: 136938628
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)