BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4650.p
         (389 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980970|ref|YP_001354895.1| G3E family GTPase [Janthinobact...   200   1e-52

>gi|152980970|ref|YP_001354895.1| G3E family GTPase
           [Janthinobacterium sp. Marseille]
          Length = 351

 Score =  200 bits (508), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 132/357 (36%), Positives = 192/357 (53%), Gaps = 20/357 (5%)

Query: 10  APIPVSLLTGFLGSGKTTLLNHLITQPEMKNTLVIINEFGEIGLDHLLMAHSQEDTVVEM 69
           A IP ++LTGFLG+GKTTLLN ++ +P      VI NEFG+  +D+ ++     + +VEM
Sbjct: 2   ALIPTTILTGFLGAGKTTLLNRILQEPHGFKIAVIENEFGQENIDNEILVQDGTEQIVEM 61

Query: 70  SSGCLCCTIRGDLKKTLKDITWRFAEGGQRKFDRVVIETTGLASPTPILHTLMTDPFIAA 129
           ++GC+CCT+RGDL   L  +  +    G+ +FD VVIETTGLA+P P+  T   D  +A+
Sbjct: 62  NNGCICCTVRGDLIIALTSLAQK-RNAGELQFDHVVIETTGLANPGPVAQTFFVDEEVAS 120

Query: 130 RYRLDGVIVTVDAVNGMSTLDHHPEAIQQAAVADRLLLTKTDLADAATLAALQARLRTLN 189
            Y +D +I  VDA + M  LD + EA +Q   AD+LL +KTDL  A  L  L  R++ +N
Sbjct: 121 EYLVDAIITVVDAKHAMHQLDSYEEAQRQVGFADKLLFSKTDLVSAEELKTLTERIKRIN 180

Query: 190 PGARQLQPQLGQIAAAELLDAGLFKPGEKM---PDVARWLNEEAFAEQQAHAHEHHHHGH 246
           P A       G++A A++LD   F   +K+   PD                      H H
Sbjct: 181 PRAPVSTTDFGRVAIADVLDLRGFNLNDKLEIDPDFIA----------------AEEHAH 224

Query: 247 DHHDHHDHGHAHHEHHDHHDHAHDVNRHDDHIRAFCFTFDEPIDPVLFDEWLSLLVGFKG 306
           +H   H+H H+   H +H  H H    H D+I AF F  + P +    DE+L  LV   G
Sbjct: 225 EHGHEHEHDHSCDAHCEHDHHDHHHGHHSDNIAAFVFKSERPFNTEKLDEFLGSLVQVFG 284

Query: 307 PNILRIKGILNLKGDDKPTVIHGVQHIFHPTATLPEWPSEDRRSRIVFITRDIERAT 363
           P +LR KG+L + G D+  V  GV  I           +E R S++VFI +++ + T
Sbjct: 285 PRMLRYKGVLWMDGADRKVVFQGVHQIMGTDIGAKWAENEVRSSKMVFIGQNLPKET 341


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 796,622
Number of extensions: 29664
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 304
Effective length of database: 906,776
Effective search space: 275659904
Effective search space used: 275659904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)