BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4649.p (946 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [... 974 0.0 gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protei... 699 0.0 gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protei... 499 e-142 gi|152981462|ref|YP_001353834.1| signal transduction protein [Ja... 401 e-112 gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinoba... 375 e-105 >gi|152982119|ref|YP_001352287.1| hypothetical protein mma_0597 [Janthinobacterium sp. Marseille] Length = 956 Score = 974 bits (2517), Expect = 0.0, Method: Compositional matrix adjust. Identities = 492/949 (51%), Positives = 651/949 (68%), Gaps = 19/949 (2%) Query: 8 LGATLSASLTLMLGLCATVTVFVATSHLEEDAVNLDFERRAGLRAFTIQRGLEEAVQVQS 67 + SA LTL +GL + +F + LE D V++DF+++A +R +Q GL+ +++V + Sbjct: 7 FSVSFSALLTLAIGLLISALLFTSVRRLEHDKVDIDFQQQAKVRVAAVQDGLDSSMRVLT 66 Query: 68 VVNHFYATVGDPSREQFDNFTRPLLERYPYVRAFSVQRFVSDEDRPVFEALRQGVKPDFE 127 +N + T G +RE+F +F PLL R PY++ F+ R++ ++R +EA + P F Sbjct: 67 DINQLFKTFGTVNREEFKSFALPLLARNPYIQGFAYHRYLPHQERAAYEAEMRKQIPGFT 126 Query: 128 ITALQDGQPQRAPQKPFYLVVDYLEPLAGNAAALGLDVSGNAAIMQALDAALASGYPAST 187 IT + DGQ A ++P Y VVDY+ P+AGN ALG D A+ A+ +G P++T Sbjct: 127 ITEMVDGQRVMAQERPRYRVVDYIVPMAGNDVALGFDADSYHFQTAAMQRAIDTGQPSAT 186 Query: 188 PPIRLAQFGPEERGLLVIQPVYRGGVQPTDLAARRALLVGDTTAVLELDGLVQKILDGAG 247 + L Q +RG +V+ PVY+ D+A+RR ++GDT AV L+ + LD Sbjct: 187 GLLHLVQERTTQRGFIVLMPVYKPDAVLPDIASRRQAVIGDTAAVFRSSDLIARSLDSDD 246 Query: 248 LM----SDHEIGLRIYVGPQATADKLVYRH--DSVAQQSQ-----WLDQIIKPGSFFRHP 296 L+ D ++ + +Y + LV+ + A +S WL F+ P Sbjct: 247 LLLTSHIDMDVDVSVYASAEHNESSLVFGKGMEPAAPRSAFGLPAWL--------FYDQP 298 Query: 297 SNTVTSFDIAGQRWHMEISIPPRSVFADHYGSLLILLVGVIASLLGAAYMRALSMRSHRV 356 FD+AG+ W M +S P + +L LVG++ S++ A Y++ + RS R+ Sbjct: 299 EPYDHVFDVAGKTWSMVVSTPSMLFLKNSSSALWAFLVGLLLSVVSAIYVQLIVDRSRRI 358 Query: 357 QQLVEEKTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSARQPDYTIEY 416 Q LV+++TA+LRT N L DI AR+ AE L+LR +AIEASANAI+I A PDY +EY Sbjct: 359 QLLVDDRTAQLRTVNDDLIADIAARKHAEHELQLRERAIEASANAIIIARAVAPDYPLEY 418 Query: 417 VNPAFARITGYSSAEAVGKSIRFLEGRDSDPDGFETVWIAMREQREHNVVLRNYHKDGSE 476 VNPAF RITGYS EA+G++I FL G+D + G E + E+RE + VLRNY KDG+ Sbjct: 419 VNPAFTRITGYSPEEALGRNIGFLWGKDWEQPGIEELRSIALEKREGHAVLRNYRKDGAL 478 Query: 477 LWNDFYIAPVRDENGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLE 536 W+D YIAPV+D+ GEV+HFV ALYDIT+ KRYE+ELEFQ +RD LTGL NR +LR L Sbjct: 479 FWSDLYIAPVKDDTGEVSHFVVALYDITATKRYESELEFQTNRDALTGLANRSLLRDRLS 538 Query: 537 QAIGAAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLG 596 QAI A R +W+ FVDLDRFKFVNDTLGH+AGD LL+ +A RL+ AVR+ DTV+R+G Sbjct: 539 QAISYAHRYNHPIWIAFVDLDRFKFVNDTLGHQAGDLLLKAIAERLQHAVRDTDTVSRMG 598 Query: 597 GDEFIMILPEQDELTLDTRSLQRIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETL 656 GDEF++ILPE+ + L T +QRIMD +A P+T+ GH F++ SIGVA YPNDG E L Sbjct: 599 GDEFVLILPERVDAGLSTGIVQRIMDGIAQPLTIEGHEFFISSSIGVAVYPNDGVTPEEL 658 Query: 657 IKHADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLA 716 IKHADIAMYR K+TGRNNFQFYT +MNE+ALERLR+EGDLRNA++ GEF+LHYQP++DL Sbjct: 659 IKHADIAMYRAKETGRNNFQFYTSSMNERALERLRLEGDLRNAMERGEFILHYQPQLDLR 718 Query: 717 SGRVVGCEALIRWLHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQCRQWQLAGHE 776 +G++VG EALIRW HP+LGM+ P RFIGLAEETGLI+PIGAWV+R AC Q + WQ G Sbjct: 719 TGKIVGVEALIRWQHPELGMIPPMRFIGLAEETGLIVPIGAWVIREACRQNKVWQEHGLG 778 Query: 777 DISVSVNLSVGQFLQKDLVSSIADVLADTGLPPASLEIELTESLMMTDVEHAIGILAGLK 836 + +SVNLS QF Q+DL+ SIA L +T LPP LEIELTESL+M DV+HAIGIL LK Sbjct: 779 SLRMSVNLSARQFAQQDLLESIALALEETQLPPQCLEIELTESLVMADVDHAIGILRELK 838 Query: 837 KLGIRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLK 896 LG++LSIDDFGTGYSSL+YLKRFPIDVLKIDRSFV DIT D DDAAI ASIISLA L+ Sbjct: 839 ALGVQLSIDDFGTGYSSLSYLKRFPIDVLKIDRSFVNDITTDPDDAAIVASIISLAHSLR 898 Query: 897 LRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVAPEKFEQMLREERAM 945 L VIAEGVET+EQL YL+ + CD+IQGY FS P+ + E ML++++ + Sbjct: 899 LTVIAEGVETEEQLAYLQQHDCDQIQGYFFSRPITADAMEVMLKDDKRL 947 >gi|152980984|ref|YP_001354305.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 910 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/586 (59%), Positives = 430/586 (73%), Gaps = 7/586 (1%) Query: 359 LVEEKTAELRTTNALLSDDIKARRLAERALRLRHQAIEASANAILILSARQPDYTIEYVN 418 L + T E+R D R+ AE ALRLR +AIE SANA++I SA+ P++ IEYVN Sbjct: 323 LAQRVTVEIRAHR-----DRHGRQAAEAALRLRERAIECSANAVIISSAQVPEFAIEYVN 377 Query: 419 PAFARITGYSSAEAVGKSIRFLEGRDSDPDGFETVWIAMREQREHNVVLRNYHKDGSELW 478 PAF RITGY++AEA+G+S FL D + G + A+ E+RE VLRNY K+GS W Sbjct: 378 PAFERITGYTAAEAIGRSSSFLLRNDHEQAGLYEIRAALAEKREGKAVLRNYRKNGSLFW 437 Query: 479 NDFYIAPVRDENGEVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQA 538 ND YIAPV+D+ G+ THFVAA+ DIT MK+YE L AS D LTGL NR +L+ LE A Sbjct: 438 NDLYIAPVKDDEGKTTHFVAAMSDITPMKQYETTLHRLASHDVLTGLPNRALLQDRLENA 497 Query: 539 IGAAERQKQALWVVFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGD 598 I + R A+WVV VDLDRFKFVNDT+GH+AGD LL+ ++ RL+A+VRE+DTVARLGGD Sbjct: 498 IAYSARNGHAVWVVLVDLDRFKFVNDTMGHQAGDVLLKIISDRLQASVRESDTVARLGGD 557 Query: 599 EFIMILPEQDELTLDTRS--LQRIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETL 656 EF+++LPE + S +QRIM+AV P+T+ G F++CS+G+A YPNDG D TL Sbjct: 558 EFVLVLPECGDGPSGYSSDVIQRIMEAVVKPLTIQGSEFFLSCSMGIAVYPNDGADPTTL 617 Query: 657 IKHADIAMYRGKQTGRNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLA 716 + HAD+AMYR K+ GRNNFQFYTPAMN+QALERLRIEG+LR+A++ E +LHYQP+VDL Sbjct: 618 LAHADVAMYRSKELGRNNFQFYTPAMNDQALERLRIEGELRHAIELNELVLHYQPQVDLH 677 Query: 717 SGRVVGCEALIRWLHPQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQCRQWQLAGHE 776 +G +VG EAL+RW HP LGMV P FI LAEETGLI+PIGAWVL+TAC Q + WQ G Sbjct: 678 TGAIVGLEALVRWNHPILGMVQPGSFISLAEETGLIIPIGAWVLQTACRQAKAWQDMGFT 737 Query: 777 DISVSVNLSVGQFLQKDLVSSIADVLADTGLPPASLEIELTESLMMTDVEHAIGILAGLK 836 + ++VNLS QF Q L+ SI D L +TGL LEIELTES +M D+E I L LK Sbjct: 738 QLRIAVNLSARQFTQASLLESIKDTLQETGLEARFLEIELTESSVMADIERNILTLRDLK 797 Query: 837 KLGIRLSIDDFGTGYSSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLK 896 LG++LS+DDFGTG+SSLAYLKRFPID LKIDRSFVRDI I+ DDA+I +SIISLA +LK Sbjct: 798 SLGVQLSVDDFGTGHSSLAYLKRFPIDTLKIDRSFVRDIAINQDDASIVSSIISLAHNLK 857 Query: 897 LRVIAEGVETDEQLDYLRHYGCDEIQGYLFSPPVAPEKFEQMLREE 942 L VIAEGVET Q+D LR GC+EIQGY F P+ ++ E +L E Sbjct: 858 LNVIAEGVETASQMDILRAQGCNEIQGYYFCKPLPSDQIETLLLNE 903 >gi|152980840|ref|YP_001353997.1| sensory box/GGDEF family protein [Janthinobacterium sp. Marseille] Length = 699 Score = 499 bits (1284), Expect = e-142, Method: Compositional matrix adjust. Identities = 261/570 (45%), Positives = 367/570 (64%), Gaps = 7/570 (1%) Query: 377 DIKARRLAERALR---LRHQAIEASANAILILSARQPDYTIEYVNPAFARITGYSSAEAV 433 D+ R+ A+ ALR R+++I NAI + P VNPA AR+ GY S +A+ Sbjct: 132 DVTERKQADEALREAERRYRSI--FENAIEGIYQSTPSDGYLAVNPALARMYGYDSPQAL 189 Query: 434 GKSIRFLEGR-DSDPDG-FETVWIAMREQREHNVVLRNYHKDGSELWNDFYIAPVRDENG 491 ++R ++ + DP E + + N R + ++G +W V + +G Sbjct: 190 ISTLRDIDNQVYVDPQRRLEFKRLMAKHGVVTNFESRVHRRNGEVIWISENARSVYNSDG 249 Query: 492 EVTHFVAALYDITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGAAERQKQALWV 551 + F + IT K +EAE++FQA+ D LTGL NR +L ++QA+ +ER + + Sbjct: 250 TLLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNRTLLYDRMQQAVLHSERYGKLTAI 309 Query: 552 VFVDLDRFKFVNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILPEQDELT 611 F+DLD+FKF+ND+LGH+ GD LL+ A RL + +RE+DTVAR GGDEF+++L +Q Sbjct: 310 AFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLRESDTVARQGGDEFVLLLTDQPNEE 369 Query: 612 LDTRSLQRIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETLIKHADIAMYRGKQTG 671 T ++QR++ V+ P +TCSIG+ P+DG D ETL+K+AD AMY+ K+ G Sbjct: 370 AITHTMQRVLHEVSQPWKANDLEFQITCSIGLTLCPDDGRDAETLLKNADSAMYKAKELG 429 Query: 672 RNNFQFYTPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVVGCEALIRWLH 731 RNNFQ+++ MN +RL + LR A+ + +F+LHYQPKV LAS +++G EAL+RW Sbjct: 430 RNNFQYFSAEMNSSVTDRLELLNRLRQAITNEDFVLHYQPKVSLASHQIIGAEALVRWNS 489 Query: 732 PQLGMVSPARFIGLAEETGLILPIGAWVLRTACTQCRQWQLAGHEDISVSVNLSVGQFLQ 791 GMVSPA FI LAEETGLI+P+G WVLRTAC Q R WQ AG+ I +SVNLS Q + Sbjct: 490 AHSGMVSPASFIPLAEETGLIIPLGEWVLRTACRQNRAWQDAGYPPIPISVNLSPRQLAR 549 Query: 792 KDLVSSIADVLADTGLPPASLEIELTESLMMTDVEHAIGILAGLKKLGIRLSIDDFGTGY 851 D+V + +L +TGL LE+E+TES+M TDVE + +L L+ LG+++S+DDFGTGY Sbjct: 550 GDIVEVVERILTETGLEAQHLELEITESVMTTDVEKSFALLTQLRSLGVKISLDDFGTGY 609 Query: 852 SSLAYLKRFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLD 911 SSL+YLKRFP+D LKID+SFVRDI D D AAI +IISL R+L L V+AEG+ET++Q Sbjct: 610 SSLSYLKRFPVDTLKIDQSFVRDIATDQDSAAIVKAIISLGRNLNLTVLAEGIETEDQFQ 669 Query: 912 YLRHYGCDEIQGYLFSPPVAPEKFEQMLRE 941 +L GCDE QGYL S PV + F +L + Sbjct: 670 FLLANGCDEGQGYLMSKPVPNKNFVDLLTQ 699 >gi|152981462|ref|YP_001353834.1| signal transduction protein [Janthinobacterium sp. Marseille] Length = 709 Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust. Identities = 205/443 (46%), Positives = 281/443 (63%), Gaps = 1/443 (0%) Query: 503 ITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGAAERQKQALWVVFVDLDRFKFV 562 + S+ EL QA +D LT L NR +L L+Q + A R++ ++F+DLD FK + Sbjct: 249 VRSLALANQELTKQALQDNLTKLPNRTLLEDRLDQMVHKAVREQSRFALMFIDLDGFKAI 308 Query: 563 NDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMILPEQDELTLDTRSLQRIMD 622 ND+LGH GD LL VA R+R +R DT ARLGGDEF+M++ E +E ++ Sbjct: 309 NDSLGHHIGDLLLIDVAKRIRDNIRAQDTAARLGGDEFVMLI-EVNEPEDAASVADKLCT 367 Query: 623 AVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFYTPAM 682 + P + + L ++ SIG+A YP DG+ L+ HAD AMY K TGRN + F+ +M Sbjct: 368 TLNQPFDIAQYNLGISASIGIAVYPEDGSTRHDLLIHADAAMYHTKSTGRNGYHFFEASM 427 Query: 683 NEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVVGCEALIRWLHPQLGMVSPARF 742 N A +L++ DLR AL+ EF LHYQPK + G VVG EAL+RW HP G+V+PA F Sbjct: 428 NINAHNQLQVIQDLRTALERKEFRLHYQPKFNTTDGVVVGAEALLRWQHPIRGIVAPADF 487 Query: 743 IGLAEETGLILPIGAWVLRTACTQCRQWQLAGHEDISVSVNLSVGQFLQKDLVSSIADVL 802 I LAE+TGLI+PIG WVL AC Q R+W G++ ++VNLS QF +LV + + L Sbjct: 488 ISLAEKTGLIVPIGEWVLDEACRQMRKWYDEGYQQWKIAVNLSSVQFSNDNLVEMVKETL 547 Query: 803 ADTGLPPASLEIELTESLMMTDVEHAIGILAGLKKLGIRLSIDDFGTGYSSLAYLKRFPI 862 A LP L +E+TES M +VE ++ IL L LG+ +SIDDFGTGYSSL YLKR P Sbjct: 548 ARNNLPATCLMLEVTESTAMHNVEASLTILEQLVSLGVEISIDDFGTGYSSLLYLKRLPA 607 Query: 863 DVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGCDEIQ 922 LKIDR F+RD+ +DDA+I ++I++L R L LR++AEGVET++Q +YL GCD +Q Sbjct: 608 TELKIDRGFIRDLAHGSDDASIVSAIVALGRSLNLRIVAEGVETEKQQEYLTTLGCDTLQ 667 Query: 923 GYLFSPPVAPEKFEQMLREERAM 945 GY P+A E+F + +A+ Sbjct: 668 GYFMGHPMASEQFMAAINALKAV 690 >gi|152983039|ref|YP_001352601.1| sensory box protein [Janthinobacterium sp. Marseille] Length = 914 Score = 375 bits (964), Expect = e-105, Method: Compositional matrix adjust. Identities = 193/441 (43%), Positives = 278/441 (63%), Gaps = 6/441 (1%) Query: 502 DITSMKRYEAELEFQASRDTLTGLINRHMLRHHLEQAIGAAERQKQALWVVFVDLDRFKF 561 D++ K +E EL A++DTLT L NR+ L +HL +A+ A ++ +L V+F+DLD FK Sbjct: 467 DVSDRKAHEEELHRLATKDTLTNLPNRYWLMNHLPKALNEANEKQDSLAVLFIDLDDFKN 526 Query: 562 VNDTLGHKAGDTLLRTVAGRLRAAVREADTVARLGGDEFIMIL---PEQDELTLDTRSLQ 618 +NDTLGH +GD+LL+ VA RL + +R D+V RLGGDEF ++L P Q++++L Sbjct: 527 INDTLGHSSGDSLLQVVASRLESVLRPGDSVVRLGGDEFTLLLESLPLQEDISLIA---N 583 Query: 619 RIMDAVAAPVTLGGHTLFMTCSIGVACYPNDGTDGETLIKHADIAMYRGKQTGRNNFQFY 678 RIM P + L ++ S+G++ YP DG D ETL+K+ADIAMY K G+N + Y Sbjct: 584 RIMQTFNQPFEIQQKMLTISASMGISRYPFDGRDAETLLKNADIAMYSAKADGKNKVRVY 643 Query: 679 TPAMNEQALERLRIEGDLRNALDHGEFLLHYQPKVDLASGRVVGCEALIRWLHPQLGMVS 738 + E+ R+ E L A+ F+++YQP+V+ +GR+VG EAL+RW HP+ G+++ Sbjct: 644 DKKLYEEIELRVDGERQLARAIQEDHFIVYYQPRVEAQTGRMVGMEALVRWAHPERGLIA 703 Query: 739 PARFIGLAEETGLILPIGAWVLRTACTQCRQWQLAGHEDISVSVNLSVGQFLQKDLVSSI 798 P FI LAE TG+ILP+G V+ Q WQ + VSVN+S QF + ++ I Sbjct: 704 PDHFIPLAESTGMILPLGRLVMEKVFCQIAAWQFQKLAVVPVSVNVSARQFDEGNVSEFI 763 Query: 799 ADVLADTGLPPASLEIELTESLMMTDVEHAIGILAGLKKLGIRLSIDDFGTGYSSLAYLK 858 A L + P +EIELTES MM + E G ++ + LGI++ +DDFGTGYSSL+ L Sbjct: 764 ASCLNKYAVDPRFIEIELTESAMMGNFEQVRGEISSISALGIQIHVDDFGTGYSSLSLLY 823 Query: 859 RFPIDVLKIDRSFVRDITIDADDAAITASIISLARHLKLRVIAEGVETDEQLDYLRHYGC 918 +F +DVLK+DR+F I +SI+S+A+ LK+RV+AEGVET EQL L+ GC Sbjct: 824 KFNMDVLKVDRAFTSQICNGKGGEIFFSSIVSMAKVLKMRVVAEGVETIEQLRVLQQLGC 883 Query: 919 DEIQGYLFSPPVAPEKFEQML 939 DEIQGYL S P+ ++L Sbjct: 884 DEIQGYLVSKPIPSSDVPRLL 904 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,149,709 Number of extensions: 90432 Number of successful extensions: 360 Number of sequences better than 1.0e-08: 34 Number of HSP's gapped: 318 Number of HSP's successfully gapped: 34 Length of query: 946 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 854 Effective length of database: 880,897 Effective search space: 752286038 Effective search space used: 752286038 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)