BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.4646.p
         (535 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981138|ref|YP_001351772.1| hypothetical protein mma_0082 [...   872   0.0  

>gi|152981138|ref|YP_001351772.1| hypothetical protein mma_0082
           [Janthinobacterium sp. Marseille]
          Length = 541

 Score =  872 bits (2254), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 422/532 (79%), Positives = 481/532 (90%)

Query: 1   MLRISELTLPLNHTEDELNAAILDRLGIPADELMSFTLFRRSYDARKKTAITLNYTIDVE 60
           MLR++++ LPL+H E++L AA+L RLG+ AD+L++FT+FRR YDARKK+AITL YT+DVE
Sbjct: 1   MLRLTDVQLPLDHQEEDLKAAVLARLGVAADDLIAFTIFRRGYDARKKSAITLVYTLDVE 60

Query: 61  VKDEPAVLARHAKTTNVGPTPDTSYHYVTRAPASLKKRPVVIGFGPCGLFAALILAEMGF 120
           VK+E  V  R A   +VGPTPDTSYH+V +APA LK RPVVIG GPCG+FA LILA+MGF
Sbjct: 61  VKNEAKVQKRLAGNRHVGPTPDTSYHFVAQAPAGLKMRPVVIGTGPCGIFAGLILAQMGF 120

Query: 121 NPLILERGKTVRERTKDTWGLWRQRELKPESNVQFGEGGAGTFSDGKLYSQVKDPKHYGR 180
           NP+ILERGK VRERTKDT+GLWRQREL PESNVQFGEGGAGTFSDGKL+SQVKDPKHYGR
Sbjct: 121 NPIILERGKAVRERTKDTFGLWRQRELHPESNVQFGEGGAGTFSDGKLWSQVKDPKHYGR 180

Query: 181 KVLAEFVAADAPPEIMYVSKPHIGTFRLVKMIQLMREKIEKLGGEFRFEQRVEDVLIEDG 240
           KVL EFV ADAP EIMYVSKPHIGTFRLVKM++LMR  IE+LGGEFRF+ +V+D+ IEDG
Sbjct: 181 KVLTEFVKADAPDEIMYVSKPHIGTFRLVKMVELMRASIEELGGEFRFQSKVDDIEIEDG 240

Query: 241 KIRGLTLANGEQIEADHVVLAIGHSARDTFEMLYQRGVYIEAKPFSIGFRAEHPQSLIDK 300
           ++RGL LA+G  I  DHVVLAIGHSARDTF+ML+ RGVYIE KPFS+GFR EHPQSLID+
Sbjct: 241 QVRGLKLADGTHIATDHVVLAIGHSARDTFQMLHARGVYIEPKPFSMGFRIEHPQSLIDR 300

Query: 301 CRFGPGAGHPILGAADYKLVHHASNGRSVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSR 360
           CRFGP AG+ ILGAADYKLVHHA NGRSVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSR
Sbjct: 301 CRFGPNAGNEILGAADYKLVHHAKNGRSVYSFCMCPGGTVVAATSEPGRVVTNGMSQYSR 360

Query: 361 NERNANSGIVVGISPADYPGHPLAGIAFQREWESRAYELGGGNYNAPGQLVGDFIANRPS 420
           NERNAN+GIVVGI+PADYPGH LAG+ FQR+WE+RA+ELGGGNY+APGQLVGDFIA+RPS
Sbjct: 361 NERNANAGIVVGITPADYPGHALAGMEFQRQWETRAFELGGGNYDAPGQLVGDFIADRPS 420

Query: 421 TQLGSVEPSYKPGVTLGDLNPSLPKYAIDAIREALPAFDKQIRGYSMHDAVLTGIETRTS 480
           T  GSV PSYKPGV LGDLN SLP YAI+AIREALPAF+KQI+G+SM DAVLTG+ETRTS
Sbjct: 421 TAFGSVLPSYKPGVKLGDLNTSLPSYAIEAIREALPAFEKQIKGFSMADAVLTGVETRTS 480

Query: 481 SPIRIKRDDHTLQSLNTQGLYPAGEGAGYAGGIMSAAIDGIRVAEALALDIV 532
           SPIRIKR+D+ LQSLNT+GL+PAGEGAGYAGGIMSAAIDGIRVAEA+AL ++
Sbjct: 481 SPIRIKRNDNDLQSLNTRGLFPAGEGAGYAGGIMSAAIDGIRVAEAVALSML 532


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.318    0.137    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,310,252
Number of extensions: 58866
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 1
Length of query: 535
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 447
Effective length of database: 895,685
Effective search space: 400371195
Effective search space used: 400371195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)