BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.4641.p (418 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981572|ref|YP_001351941.1| acyl-CoA dehydrogenase family p... 405 e-114 gi|152981725|ref|YP_001351956.1| hypothetical protein mma_0266 [... 196 3e-51 gi|152981648|ref|YP_001354310.1| FMNH2-dependent monooxygenase [... 150 2e-37 >gi|152981572|ref|YP_001351941.1| acyl-CoA dehydrogenase family protein [Janthinobacterium sp. Marseille] Length = 437 Score = 405 bits (1040), Expect = e-114, Method: Compositional matrix adjust. Identities = 208/409 (50%), Positives = 279/409 (68%), Gaps = 10/409 (2%) Query: 10 TTLDTLPPPSSTPPRLVARIRDDAQALASARQLAEDFRGEAALRDRERKLPWDELERYVR 69 +T +TL RL IR D +ALA+A+ LA++F EA++RDRER+LP+ EL++ + Sbjct: 2 STSNTLQYADHGEVRL---IRSDEEALATAQVLADEFAQEASVRDRERRLPFAELKKITQ 58 Query: 70 SGLWGITVPKEYGGAGVSYGTLAEVIATLSAADGSIGQIPQNHFYAVEVIRVNGSDAQKR 129 SGLWGITVPKE+GGAGVSY TLA++ A S ADGSIGQIPQNH++ +E+IR +G++ QK+ Sbjct: 59 SGLWGITVPKEHGGAGVSYVTLAQIFAIFSRADGSIGQIPQNHYFVIELIREHGTEEQKK 118 Query: 130 FFFEQVLQGQRFGNALAELGTKTSHDRKTRL--TRNEHGPGYRISGRKFYATGALFADWV 187 FFFE++L G FGNAL EL K DRK L +EH YR + RK+YATG+L+ADW+ Sbjct: 119 FFFERILAGDHFGNALVELNAKKPEDRKVSLFADGDEH---YRATVRKYYATGSLYADWI 175 Query: 188 PTSVIDEDGVQ-QLAIVPRHATGLTIIDDWSGFGQRTTGSGSAVFENVHVPAEAVIGFAS 246 PT++ ED + LA RHA GLTIIDDW+G GQRTT SGS + +N + V+ Sbjct: 176 PTALNSEDKEEHHLAFFSRHAEGLTIIDDWAGLGQRTTASGSVILDNARIAKNLVVSHRE 235 Query: 247 AFTRPTQLGPMAQLQHAAIDLGIARAAYADLLEFVRTRSRAWVDSGVQRA-ADDPLTIRE 305 + +GP Q+ HAAID GIARAA+ + F+R R+ D+ + +D LTIRE Sbjct: 236 KKEHVSPVGPTGQIMHAAIDTGIARAAFEATIAFIRGRNPKKPDAAPDASWEEDQLTIRE 295 Query: 306 VGDLTIQLHAAEALVRRAARKVEAAAAAPDEDSVAAASIAVAEARVLTTEVSLAAGSKLF 365 +GDL++ LH AEAL+ RA R ++ A + ASIAV+E R +T +L +KLF Sbjct: 296 IGDLSVALHGAEALLERAGRIIDHAYVTGLQTDWTKASIAVSEVRAASTHAALLITNKLF 355 Query: 366 ELAGSQSTLSEHNLDRHWRNARTHTLHDPVRWKYHAIGNYVLNGKKPPR 414 E +G+Q+T S+HNLDR+WR+ARTHTLHDPVRW+ + +GNY LN K P R Sbjct: 356 EFSGTQATASKHNLDRYWRDARTHTLHDPVRWRLYDVGNYYLNDKVPLR 404 >gi|152981725|ref|YP_001351956.1| hypothetical protein mma_0266 [Janthinobacterium sp. Marseille] Length = 425 Score = 196 bits (497), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 141/423 (33%), Positives = 222/423 (52%), Gaps = 31/423 (7%) Query: 1 MTQTAALSATTLDTLPPP-SSTPPRLVARIRDDAQALASARQLAEDFRGEAALRDRERKL 59 MT TA + LDT P + T L AR R AR +AED A R++ER+L Sbjct: 1 MTNTATIH--HLDTKPVAVAPTYEELAARFRP-----IFAR-IAED----AVRREQEREL 48 Query: 60 PWDELERYVRSGLWGITVPKEYGGAGVSYGTLAEVIATLSAADGSIGQIPQNHFYAVEVI 119 P++ + +G + +P +YGG G + ++ L+ AD ++ + + HF +E Sbjct: 49 PYEAVRWLREAGFGRVRIPLKYGGFGATISQFFRLLVELAEADSNVSHLLRGHFAFLES- 107 Query: 120 RVNGSDAQKR-FFFEQVLQGQRFGNALAELGTKTSHDRKTRLTRNEHGPGYRISGRKFYA 178 R+N +D R F+F ++++G G A+AEL T T T + + ++G+K+Y+ Sbjct: 108 RINHTDESVREFWFPKIVEGSLIGYAMAELTAVTG----TSATITQQDGKWFLNGKKYYS 163 Query: 179 TGALFADWVPTSVIDEDGVQQLAI-VPRHATGLTIIDDWSGFGQRTTGSGSAVFENVHVP 237 TG ++ADW+ SV+D G +++++ +P A G+T IDDW GFGQR TGSG+ VFE V + Sbjct: 164 TGTIYADWIVASVVD--GEERVSVSLPATAPGVTRIDDWDGFGQRMTGSGTTVFEQVEIL 221 Query: 238 AEAV---IGFASAFTRPTQLGPMAQLQHAAIDLGIARAAYADLLEFVRTRSRAWVDSGVQ 294 E + + ++ + Q + + A+I G+ RA D + FV+ ++RA+ G Sbjct: 222 PEHINRRLTGKDSYAQSYQKAFLQLILLASI-AGVGRAVKRDGIAFVQRKTRAFGVLGES 280 Query: 295 RAADDPLTIREVGDLTIQLHAAEALVRRAARKVEAA-----AAAPDEDSVAAASIAVAEA 349 DPL R VG L AA+ +V AR ++ A DE I +A Sbjct: 281 SPRHDPLVQRVVGRLASLSFAADTIVEGIARTLDEVHQARLADTADEALYVDTEIKAFQA 340 Query: 350 RVLTTEVSLAAGSKLFELAGSQSTLSEHNLDRHWRNARTHTLHDPVRWKYHAIGNYVLNG 409 + + ++ L A + LFE+ G+ +T LDRHWRNART H+P ++ AIG+Y LNG Sbjct: 341 QQIVIDLVLQASTLLFEVGGASATSESRRLDRHWRNARTAASHNPAIFRERAIGDYYLNG 400 Query: 410 KKP 412 P Sbjct: 401 TVP 403 >gi|152981648|ref|YP_001354310.1| FMNH2-dependent monooxygenase [Janthinobacterium sp. Marseille] Length = 417 Score = 150 bits (378), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 117/371 (31%), Positives = 182/371 (49%), Gaps = 16/371 (4%) Query: 53 RDRERKLPWDELERYVRSGLWGITVPKEYGGAGVSYGTLAEVIATLSAADGSIGQIPQNH 112 RDR W E + SGL + VP +GG + T+ ++I + D S+ + Sbjct: 46 RDRSGGTAWTERQVLRDSGLLKLAVPAAFGGPETPWPTIYKIIRRFAEVDSSLAHLFGFQ 105 Query: 113 FYAVEVIRVNGSDAQKRFFFEQVLQGQRF-GNALAELGTK-TSHDRKTRLTRNEHGPGYR 170 V + + G+ QK F+ + + F GNA L T+ T R + + H Y Sbjct: 106 HLQVASVALFGNPEQKAFYLGKTVSENWFWGNATNGLDTRATLVWRDGKDGTDGH---YE 162 Query: 171 ISGRKFYATGALFADWV----PTSVIDEDGVQQLAIVPRHATGLTIIDDWSGFGQRTTGS 226 ++G K + +GA +D + P S D V +P +G+ ++DDW GQR T S Sbjct: 163 LNGIKSFCSGATGSDMLNITAPRSADPADRV--FLSIPTDRSGVKVLDDWDNLGQRQTDS 220 Query: 227 GSAVFENVHVPAEAVIG--FASAFTRPTQLGPMAQLQHAAIDLGIARAAYADLLEFVRTR 284 GS F+ V V A V+G S R T ++QL I +G A+ A + ++ + Sbjct: 221 GSVTFDKVRVEAHEVLGPPGTSGTPRATLRTLVSQLILIEIYIGNAQGALLNAWQYTHEQ 280 Query: 285 SRAWVDSGVQRAADDPLTIREVGDLTIQLHAAEALVRRAARKVEAAAAAPDEDSVAA--- 341 R W SGV RA DDP T + GDL I L AA AL AA +++ A D + A Sbjct: 281 GRPWFTSGVARAIDDPFTQQHYGDLRIALRAAIALAEDAAARLQKAWERGDALTAAERGE 340 Query: 342 ASIAVAEARVLTTEVSLAAGSKLFELAGSQSTLSEHNLDRHWRNARTHTLHDPVRWKYHA 401 ++A+ E ++ +L +K+FE+ G+++T +++ DR WRN R HTLHD + +K Sbjct: 341 LAVAIYETKIAAARAALDITAKIFEVMGARATAAKYGFDRFWRNVRVHTLHDSLDYKLKD 400 Query: 402 IGNYVLNGKKP 412 +G +VL G+ P Sbjct: 401 VGQWVLTGEVP 411 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.132 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 888,603 Number of extensions: 36692 Number of successful extensions: 107 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 97 Number of HSP's successfully gapped: 3 Length of query: 418 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 332 Effective length of database: 903,079 Effective search space: 299822228 Effective search space used: 299822228 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)